NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTGCTAGCATATTGGTTGTGCTGATAAATACCAGATTTCCAG
GTACCAAAGGAGACAAAACTGATGCCATGTAGAAGCAGTAAGTAAGGCAG
TGTTCATTCCAACAGGAATAGGCAGAGATACTCACAGCATCCTAGGACCT
GCCCCTATGTTGGCCTTTAGTAAATTAGATGTGTTGACTAAAGAAACAAA
TTATGTGTACACATATGATTTAAAAGTACTAATCACACACGATTATATTT
GAATATGTTGCAAAACCTTGCTAAGAACAACTGAAGGATTCATACTGTCC
ATATCTTGGAGATGCATGCTTTTTAATCTCAGATGCTATGACTTGCTTCA
GCTCTTCATAAAGAAAATGGGCTTTTGCCGCAAGAACTTTGGACTTAATT
TAGCAATAAAGGCACATGGTTTTCTTTGGTGATGTACTAGTTGGTTTATT
GTTATTATTACTGTCATCATCATCATCGGTATTGAGGAAGAATCTATTTT
CTTTAGAAGCCCCTAACAAAAACTGTTCCTATCGAACCATGCTGTGACTG
TTAATCTTAAATATCAATTTCACTAGTTTTTGAAACACCTGCAGGACAAT
TCCTTGGGTGTGCCCGGGAAGGATGCCTCACAGGAATGAAAAATTAGAAC
CCCGGAATCCACCCAAATTACACCTTTTCTGGCTCCCGAACTTTATGGGG
GGGGAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTTTCTGTGACTACCTGA
CCATGGAGTACAGAACTTTGGAATCAGTTTGTGGGAGGAATTTAGAGAAG
TTGGAGATGCAGACTACAGAAACCAATGGGTGTTGAAAGTACAGCTTAAT
GAATGGCACCATGGGAGCTCAGGCGAGCAGAGCACAAACAGGAAACATGG
CAGAAAATGTGATGGTGGTGGGGAATCAGGAGGGAACACGACTATTTGAA
ATCAGACGCAAGGTCATAAATGTTTCATTATGTAACAACTTGTCTGCATT
TAGCACACGTGGGGAGACTTTGAGATAGATTTATGATAAACTAATCTCTC
GAGCGCGCCCCCAACTCGCCAGCAAGAACGACGCTGCTACAGGATCCTTC
TGCACACGTTTATTCAGTCCTATTTCTTCTTGTTTATATCTCCCTTGTTT
ATATCTCCCTTGTTTATATCTCCCTCGAACCCTGGGCCTCTCACTTCTTT
ATACTCTCAGTTCCCATCACGCACAGCAGGGCCCGCCACCTCACCAGGTA
CGGAGGTTTCGCTTATTCTGGGCATGCGGGGGTTAACTTCCCCCAAATTG
GATTTCCCCTGGTTTCTGGGAACCCTGGCCGGTACTTCAGAAAGTTCGTG
GCCTTTATTAAAGAATTCCGCGGCTTTTCTATAAACTCTAATTACTTCTC
CGCGCCN

Query= MSMg01no357_d08.b1 MSMg01no357_d08.b1 CHROMAT_FILE:
MSMg01no357_d08.b1 PHD_FILE: MSMg01no357_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:08 2005
         (509 letters)



>mm_chr5_45722674_45723585
          Length = 912

 Score =  928 bits (480), Expect = 0.0
 Identities = 500/508 (98%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgctagcatattggttgtgctgataaataccagatttccaggtaccaaagga 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 712 gaattccttgctagcatattggttgtgctgataaatacgagatttccaggtaccaaagga 653

                                                                       
Query: 65  gacaaaactgatgccatgtagaagcagtaagtaaggcagtgttcattccaacaggaatag 124
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 652 gataaaactgatgccatgtagaagcagcaagtaaggcagtgttcattccaacaggaatag 593

                                                                       
Query: 125 gcagagatactcacagcatcctaggacctgcccctatgttggcctttagtaaattagatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcagagatactcacagcatcctaggacctgcccctatgttggcctttagtaaattagatg 533

                                                                       
Query: 185 tgttgactaaagaaacaaattatgtgtacacatatgatttaaaagtactaatcacacacg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgttgactaaagaaacaaattatgtgtacacatatgatttaaaagtactaatcacacacg 473

                                                                       
Query: 245 attatatttgaatatgttgcaaaaccttgctaagaacaactgaaggattcatactgtcca 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 472 attatatttgaatatgttgcaaaaccttgctaagaacaactgcaggattcatactgtcca 413

                                                                       
Query: 305 tatcttggagatgcatgctttttaatctcagatgctatgacttgcttcagctcttcataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tatcttggagatgcatgctttttaatctcagatgctatgacttgcttcagctcttcataa 353

                                                                       
Query: 365 agaaaatgggcttttgccgcaagaactttggacttaatttagcaataaaggcacatggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 agaaaatgggcttttgccgcaagaactttggacttaatttagcaataaaggcacatggtt 293

                                                                       
Query: 425 ttctttggtgatgtactagttggtttattgttattattactgtcatcatcatcatc---g 481
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |
Sbjct: 292 ttctttggtgatgtactagttggtttattgttattattactatcatcatcatcatcatcg 233

                                       
Query: 482 gtattgaggaagaatctattttctttag 509
           ||||||||||||||||||||||||||||
Sbjct: 232 gtattgaggaagaatctattttctttag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 912
Length adjustment: 10
Effective length of query: 499
Effective length of database: 902
Effective search space:   450098
Effective search space used:   450098
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)