Query= MSMg01no357_e06.b1 MSMg01no357_e06.b1 CHROMAT_FILE:
MSMg01no357_e06.b1 PHD_FILE: MSMg01no357_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:13 2005
(466 letters)
>mm_chr5_30848997_30849862
Length = 866
Score = 833 bits (431), Expect = 0.0
Identities = 453/463 (97%), Gaps = 5/463 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcactcccacttcacttcagagatgggaactgaggcttacagtaatttttatg 63
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 ggaattctcactcc-----cacttcagagatgggaactgaggctaacagtaatttttatg 626
Query: 64 atttgattaaagtgatgaaatccgacctttaatatgtcaaagttcaggtttctgaccacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttgattaaagtgatgaaatccgacctttaatatgtcaaagttcaggtttctgaccacc 566
Query: 124 acatatagtagcttttaagtgtcactgtatacaatcaggcaagtattgcctacagttcaa 183
||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 565 acatatagtagctattaagtgtcactgtatacaatcaggtaagtatggcctacagttcaa 506
Query: 184 aggctacatgcatgctaaggtaactatgaatgtggaattacttgaaacattaagggtccc 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 aggctacatgcatgctaaggtaactatgaatgtggcattacttgaaacattaagggtccc 446
Query: 244 ttcccctcaacttgacagcacagttttcaagcctgaacttcataggtattacagtattaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcccctcaacttgacagcacagttttcaagcctgaacttcataggtattacagtattaa 386
Query: 304 ggggttgatgtgcctgtcttcttgtttagaagtctctgtatatgcatgtctccacactgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggttgatgtgcctgtcttcttgtttagaagtctctgtatatgcatgtctccacactgt 326
Query: 364 taacctctggtaacatcagtttccaactccagggatgtgtgtacatggtgtacaactcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taacctctggtaacatcagtttccaactccagggatgtgtgtacatggtgtacaactcca 266
Query: 424 gggatgtgtgcacatgttctgactctaagagctgtgtctcgcc 466
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggatgtgtgcacatgttctgactctaagagctgtgtctcgcc 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_e06.g1 MSMg01no357_e06.g1 CHROMAT_FILE:
MSMg01no357_e06.g1 PHD_FILE: MSMg01no357_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:13 2005
(292 letters)
>mm_chr5_30704838_30705529
Length = 692
Score = 542 bits (280), Expect = e-158
Identities = 289/292 (98%)
Strand = Plus / Plus
Query: 1 ccaagagtcttttccaaagcaaggaacaaggctggggtggggggaactactcaaatgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagagtcttttccaaagcaaggaacaaggctggggtggggggaactactcaaatgtcc 260
Query: 61 tgaaggaccccacaaataatggtaccctgtgacctgctttggggaacctcttttcatgcg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaggaccccacaaataatggtgccctgtgacctgctttggggaacctcttttcatgcg 320
Query: 121 tgcatcagaacgtcaggggaagctagaaggacgaagggacagggaggcccactcacacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatcagaacgtcaggggaagctagaaggacgaagggacagggaggcccactcacacct 380
Query: 181 atggaactgcagttctacagcggtcttcatctccccttgcctccagggccagaagtatga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggaactgcagttctacagaggtcttcatctccccttgcctccagggccagaagtatga 440
Query: 241 catgaccagataggtagatcactctggtggtgacagggagggtagagtggat 292
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaccagataggcagatcactctggtggtgacagggagggtagagtggat 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
