BAC Information

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BAC

Clone NameMSMg01-357G14
Chromosome5 (Build37)
Map Location 72,271,961 - 72,272,415
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357G14.T7 (MSMg01no357_g14.b1)MSMg01-357G14.TJ (MSMg01no357_g14.g1)
ACCAG467320AG467321
length738764
length of high quality
(start - end)
520 (45 - 564)454 (74 - 527)
definitionCHROMAT_FILE: MSMg01no357_g14.b1 PHD_FILE: MSMg01no357_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:24 2005CHROMAT_FILE: MSMg01no357_g14.g1 PHD_FILE: MSMg01no357_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTTCGCTCTATGCCCCATTTTTAATAGGGTTATTTGTTTCTT
TGGAGCCTAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTA
TAAGATTTAGGATTGGTTTAGATCTTTTCCCAATCTGTTGGTTGCCTTTT
TGTCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTAAAC
ATAGGAAAAGCAACATACAGCAGGCCAGTAGCCAACATCAAGCTAAATGG
AGAGAAACTTGAAGCAACCCCACTAAAATCAGGGACTAGACAAGACTGAC
CACTCTCTCCCTACGTATTCAATATAGTACTTGAAGTCCTAGCCAGAGCA
ATTCGACAACAAAAGGAGATCAAAGGGATGCAAATTGGAAAGGAAGAAGT
CAAACTATCACTATTTGCAGATGATATGATAGTATACTTAAGTGACCCCA
GAAATTCCACCAGAGAACTCCTAAACCTGATAAACAACTTCAGCAAAGTA
GCTGGATATAAAATTAACTCAAACAAATCAGTGGGCTTTATCTACACAAA
GGATAAACAGGCAGAGAAACCAATTAGGGAAACACCACCTTTCCCATAAG
CCCTAATAATATAAAAAATCTTGGTGTGACTCTACTAAACAATGGAAGAT
CTGTAGGAAAAAATTTCCGTTTCTGAAAATAAAATTCC
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCCGAATATGGACTCATTACTCTG
TGTTGGAGGACCTAACAAAATTTTGTACATTTGAAAATGATCACGACCTT
GAGAGAGGTATTTCTGTGTATTCTGTGTACCTTCTGTAACTCTTCTTGTG
TCTGTAATGGAAAACAACAGGTGACTGACATAGAAACACAAATACAAATG
CCCTTTGAGAGTAATGTATGTAGAATATCAGTGGGGTTTTATGAAGAACA
CAGACAGGGAAATGAGAAGACAGGTTCCACCTTGTTCTCAATGTTTCTAG
TCATTTTTCAAAAATGGCTGGAGGAAACAGAGGAGTTGATCCCTTCTAAA
ATAAGGAAATTAATGTTCACATTATTATATTGTTATATCTGTAATACCAG
AAGAGAAATATCAAACAAATGANAATGTTCATATCTAGGGGTAAAAATAT
AATGGAGGACTGTGGTAGTAAATATTTTAATCACAATTGGAGTTTCTACC
CTACTTATTCAGTTCCCCAATAAGAGAAACACCACTTTTATATTTTATAA
TAACCCTTTATGTACTTAAGCTGGGCCCAAATTTTACCCCCCTTTGCATT
GGTATTTTACTTTTTCTGCTATAAATTCCCAATTATTAAATTCCCCTTTT
TTGCTCCTTTGGAACTCCTTAACTTCCATTTTTCCAACGCCCCTTTTTTT
TTGTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_g14.g1 MSMg01no357_g14.g1 CHROMAT_FILE:
MSMg01no357_g14.g1 PHD_FILE: MSMg01no357_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:24 2005
         (454 letters)



>mm_chr5_72271761_72272615
          Length = 855

 Score =  859 bits (444), Expect = 0.0
 Identities = 452/455 (99%), Gaps = 1/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttccgaatatggactcattactctgtgttggaggacctaacaaaattttgtacatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttttccgaatatggactcattactctgtgttggaggacctaacaaaattttgtacatttg 596

                                                                       
Query: 61  aaaatgatcacgaccttgagagaggtatttctgtgtattctgtgtaccttctgtaactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 aaaatgatcacgaccttgagagaggtatttctgtgtattctgtgtaccttctgtaactct 536

                                                                       
Query: 121 tcttgtgtctgtaatggaaaacaacaggtgactgacatagaaacacaaatacaaatgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcttgtgtctgtaatggaaaacaacaggtgactgacatagaaacacaaatacaaatgccc 476

                                                                       
Query: 181 tttga-gagtaatgtatgtagaatatcagtggggttttatgaagaacacagacagggaaa 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttgaggagtaatgtatgtagaatatcagtggggttttatgaagaacacagacagggaaa 416

                                                                       
Query: 240 tgagaagacaggttccaccttgttctcaatgtttctagtcatttttcaaaaatggctgga 299
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 415 tgagaagacaggttccaccttgttctcaatgtttctagtcattttgcaaaaatggctgga 356

                                                                       
Query: 300 ggaaacagaggagttgatcccttctaaaataaggaaattaatgttcacattattatattg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggaaacagaggagttgatcccttctaaaataaggaaattaatgttcacattattatattg 296

                                                                       
Query: 360 ttatatctgtaataccagaagagaaatatcaaacaaatganaatgttcatatctaggggt 419
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 295 ttatatctgtaataccagaagagaaatatcaaacaaatgaaaatgttcatatctaggggt 236

                                              
Query: 420 aaaaatataatggaggactgtggtagtaaatattt 454
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaaatataatggaggactgtggtagtaaatattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 855
Length adjustment: 10
Effective length of query: 444
Effective length of database: 845
Effective search space:   375180
Effective search space used:   375180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)