BAC Information

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BAC

Clone NameMSMg01-357H13
Chromosome5 (Build37)
Map Location 26,804,386 - 26,804,571
singlet/doubletsinglet
Overlap gene4930584F24Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837
Downstream geneDpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357H13.T7 (MSMg01no357_h13.b1)MSMg01-357H13.TJ (MSMg01no357_h13.g1)
ACCAG467364AG467365
length747645
length of high quality
(start - end)		578 (62 - 639)196 (89 - 284)
definitionCHROMAT_FILE: MSMg01no357_h13.b1 PHD_FILE: MSMg01no357_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:28 2005CHROMAT_FILE: MSMg01no357_h13.g1 PHD_FILE: MSMg01no357_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCCTACACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAAT
GGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCCTCAAAATTCCCACTCAATTCTTTCACGA
ATTGAAAGGAGCAATTTGCCAATTTGTCCTGGAATAACACAAAACCN

TCCCCCANNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACATATCAA
GAGTTTTACTCCTGACATGGACCATCTAACCACATGATTTGCCTAGAAAA
TGAAAAACTATTTAATATGCAAAAAGCATTGTTAAGTGCATTAGAAGCGT
GGNGAAAATAGTTGAATGTCATATCTAAATCTACTTTCCTTCAGTCATTG
AATAAGAAATTTAAAAACATANNCCTACAGGGAATAATTTCCTAAGCCTT
TCTGGGAATTCTTGAAAACCTCCTGGGACCTGGACAATTCTTGAACCAAA
GAAACAAGGATTCGGGCTGATCCCCGTAAAAAAAACCCAGGGGGGACCTT
GGAGACCCTTTTTTCCCCCGGGGGGGGGCCCCTTTTCTCTCCCCAAAAGA
GAAAGGCGCTCCTCTCTTTCTAAAAGGGGGGGGTTTTTTTTTATGAAAGA
GGGGCGGCCCTTTTAAAAAAATAAATAGGGGGGGCGGGGGGTGTTTTTTA
AAAAAAAAAATAAAACCCCCCCTCCTTTTTTTTGTGTGGGGGGGGGCGCC
CACAAAAAAAAAAAATAAACTATCTCCTTTTTTTTTAAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_h13.g1 MSMg01no357_h13.g1 CHROMAT_FILE:
MSMg01no357_h13.g1 PHD_FILE: MSMg01no357_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:28 2005
         (196 letters)



>mm_chr5_26804186_26804774
          Length = 589

 Score =  304 bits (157), Expect = 3e-87
 Identities = 182/193 (94%), Gaps = 7/193 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacatatcaagagttttactcctgacatggaccatctaaccacatgatttgcctagaa 60
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacatattaagagttttattcctgacatggaccatctaaccacatgatttgcctagaa 260

                                                                       
Query: 61  aatgaaaaactatttaatatgcaaaaagcattgttaagtgcattagaagcgtggngaaaa 120
           ||||||||||||    ||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 261 aatgaaaaacta----atatgcaaaaagcattgttcagtgcattagaagcatgg-gaaaa 315

                                                                       
Query: 121 tagttgaatgtcatatctaaatctactttccttcagtcattgaataagaaatttaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tagttgaatgtcatatctaaatctactttccttcagtcattgaataagaaatttaaaaac 375

                        
Query: 181 atanncctacagg 193
           |||  ||||||||
Sbjct: 376 ata--cctacagg 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 589
Length adjustment: 8
Effective length of query: 188
Effective length of database: 581
Effective search space:   109228
Effective search space used:   109228
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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