Query= MSMg01no357_j11.b1 MSMg01no357_j11.b1 CHROMAT_FILE:
MSMg01no357_j11.b1 PHD_FILE: MSMg01no357_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:38 2005
(516 letters)
>mm_chr5_107927727_107928642
Length = 916
Score = 948 bits (490), Expect = 0.0
Identities = 509/516 (98%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 1 cagtgttctgtaatctctcatagtagcaattagaaacccatatgcttgcacatgcttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgttctgtaatctctcatagtagcaattagaaacccatatgcttgcacatgcttaca 260
Query: 61 cacctggacaaactgccagtgtggtgcggttaggcattgtacttccctgttgttaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctggacaaactgccagtgtggtgcggttaggcattgtacttccctgttgttaggctg 320
Query: 121 cattagggtaattctcaaattacaaacatgttgacctgtaaggagtcctgacctgtgcgt 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cattagggtaattctcaaattacaagcatgttgacctgtaaggagtcctgacctgtgcgt 380
Query: 181 agttactgccttgggtcacctttgttctaacattctgaggttcttactgtggtcctgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttactgccttgggtcacctttgttctaacattctgaggttcttactgtggtcctgact 440
Query: 241 ggagaatttttattaatttctgtgtgttactatgccgtcatctgactgctgcaaatcagt 300
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ggataatttttattaatttctgtgtgttattatgccgtcatctgactgctgcaaatcagt 500
Query: 301 ccttgctgtctccagggttgcttgctctgccgggcagcatgtatccatggaacagagact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgctgtctccagggttgcttgctctgccgggcagcatgtatccatggaacagagact 560
Query: 361 ggagaagcagtttgatagctgctttactaaatacatggatatttgagaaatgatatgtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagaagcagtttgatagctgctttactaaatacatggatatttgagaaatgatatgtgc 620
Query: 421 aaataaattccttcttcaaagtaaaccgtcaagcactgtaagccctgaaactctgagcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaataaattccttcttcaaagtaaaccgtcaagcactgtaagccctgaaactctgagcta 680
Query: 481 gactatacctgagtcacattatttcatatctttctg 516
||||| ||| ||||||||||||||||| |||||||
Sbjct: 681 gactagacccgagtcacattatttcat--ctttctg 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_j11.g1 MSMg01no357_j11.g1 CHROMAT_FILE:
MSMg01no357_j11.g1 PHD_FILE: MSMg01no357_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:38 2005
(478 letters)
>mm_chr5_108118581_108119458
Length = 878
Score = 876 bits (453), Expect = 0.0
Identities = 459/461 (99%)
Strand = Plus / Minus
Query: 18 ttgcaacaggcagaacaaacgatttcaaagtgatgaaatgaaaacccaatgtagactgcc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttgcaacaggcagaacaaacgatttcaaagtgatgaaatgaaaacccaatgtagactgcc 819
Query: 78 attcagaacttcactgatcccgtgatgtcgtctttaacatttaaacacatccagctgggc 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 attcagaacttcactgatcccgtgatgtcgtctttaacatttaaacacatccagctgggc 759
Query: 138 actgtggtgtatgcctgtaatcccagcactgaggatgagacaggaggattaaaacactgg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 actgtggtgtatgcctgtaatcccagcactgaggatgagacaggaggattaaaacactgg 699
Query: 198 cctgggctatgcagcaaaacattaaaacctcctatacatacttagttttttgtcagaata 257
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 698 cctgggctatgcagcaaaacattaaaacctcctatacatacttagtttttcgtcagaata 639
Query: 258 tattgatggtatatataatgaaaatattgcctatttcataaaaggggatcagacttgggc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tattgatggtatatataatgaaaatattgcctatttcataaaaggggatcagacttgggc 579
Query: 318 tgtgcagttccttagctcaataaatgacagaactaggaaaactaggaaagtacctccaag 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtgcagttccttagctcaataaatgacagaactaggaaaactaggaaagtacctccaag 519
Query: 378 agctggcattatatctgagactttagagaactctgcaaagagcagaagatagaggtggaa 437
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aactggcattatatctgagactttagagaactctgcaaagagcagaagatagaggtggaa 459
Query: 438 atgtgcagaggcctcggggtggtgaggtggtaggcattggt 478
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atgtgcagaggcctcggggtggtgaggtggtaggcattggt 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
