TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACTTTACTTGCCAAGGTTACAGTGAACTCTCACACTGGGAGTC
TATCCTGCTTCTCTTTGCATTAGAGAACACGAGGTCCACTGTTGAAGACC
CTGACTGGGATTTGCTTGTCTCAGGGATGCTCTTTTATAAAACGTTCTGC
CATGATGAAAATGCCCTATGCCTGAGCTGACCTGGGTCACATGTGGCTAC
TGAGGACTTAGCCATTGTGACTGGAGACATGAAGTTCTTTACTTACTGGG
TAATTGCGTATTGGGTTGATTCGGTCTGTATGGCTAGCAGCTGCTTTCTT
GGCCAGCTCTGCGCCTGAGTTTCAGGTCTGGTAACCTTGTCTCATGTTGC
AAGGCCAATTACTGCTTTTCTTCCTTCAGCCCAAGGAACAAAAACCACAA
AAGGTTTGTTTCTGTGTGCATGTCCCTCCCATGAAAACATTCCTTCACTT
CCTCAGACAGCTCTTAATTGTTGGTTTCAGGATCTCCCCCCAGTCTCCTT
CTCCTCGTCTTCATTCTGATTCTCGCTGCGTCCTGACCCTTCTAGATATA
AAATGCTTTCTCGCTCCTTTTTGTTTTTTTATCCAAATTCCTCATATTTT
TACGCTCTCCCCCCATTGTACCCCACTTATTCCTCCCGATTTTCCTGTCC
GTTACCTTCGTATTAACCATGCCTTTTCTCTTTTCTCCCCTTTTC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATGCTATACTCCCACTGATA
GGGACGTGTCTTAACTTTCTGTTCAGTTTTAAAGACTCAAAAGCAGCAGT
AGCAGACAGTACAAACTGAGGGAAGGCTGCTGGTAGCTCAGACCACTGAC
ACGCTAAGAGTATCATCTCCAGGCATGGGTCCACCCACCTTTACATACAG
GTTCCTAGGACAAGGGGAGAGAGGCGAGTCACACATTGCACTTCCTTTGT
GGCAGCTGACCTTAGAACCGTCAGTCGGGAAGGTGGCAGTAAACTATGAG
CTGAGCTCGATGTCTGGCCCTTCACGAGTGACACAGAATGATGTCTGTTT
TTCTGTAAGGGGCTGAAGAGATGAATTTCCCACAGTGGGAGACACAGTGA
TGACTACGGCTGTCACTGAGGAGAGCGGAAGCAGGCCAGCACCAGTCAGA
GTGCTCTTAGCAACTGGGACTCTGTCTGCACTTTGACATCTAGCCAGGCT
TATGTCTAATTCTGAAAAGCTTAGTGACATTTTAGAGAAAAGACGAACTA
TCTGGTAGGTGTAAAGACAGACAAAATATTCAGGTCTAGAGCTAAGGCTT
TCAAGGCAAAAATACAATGACACGAGGCAAATACTTTTTAAATGAGAAGG
CCCTGATTTTCTGGTTTCCCTATGGGCAGGAAATAAATTAACCT

Query= MSMg01no357_k03.b1 MSMg01no357_k03.b1 CHROMAT_FILE:
MSMg01no357_k03.b1 PHD_FILE: MSMg01no357_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:41 2005
         (458 letters)



>mm_chr5_74342193_74343050
          Length = 858

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 50  ggagtctatcctgcttctctttgcattagagaacacgaggtccactgttgaagaccctga 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggagtctatcctgcttctctttgcattagagaacacgaggtccactgttgaagaccctga 799

                                                                       
Query: 110 ctgggatttgcttgtctcagggatgctcttttataaaacgttctgccatgatgaaaatgc 169
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 798 ctgggatttgcttgtctcagggatgctcttttataaaacattctgccatgatgaaaatgc 739

                                                                       
Query: 170 cctatgcctgagctgacctgggtcacatgtggctactgaggacttagccattgtgactgg 229
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cctgtgcctgagctgacctgggtcacatgtggctactgaggacttagccattgtgactgg 679

                                                                       
Query: 230 agacatgaagttctttacttactgggtaattgcgtattgggttgattcggtctgtatggc 289
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 678 agacatgaagttctttacttactgggtaattgcgtattgggttgaaacggtctgtatggc 619

                                                                       
Query: 290 tagcagctgctttcttggccagctctgcgcctgagtttcaggtctggtaaccttgtctca 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tagcagctgctttcttggccagctctgcgcctgagtttcaggtctggtaaccttgtctca 559

                                                                       
Query: 350 tgttgcaaggccaattactgcttttcttccttcagcccaaggaacaaaaaccacaaaagg 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgttgcaaggccaattactgcttttcttccttcagcccaaggaacaaaaaccacaaaagg 499

                                                           
Query: 410 tttgtttctgtgtgcatgtccctcccatgaaaacattccttcacttcc 457
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttgtttctgtgtgcatgtccctcccatgaaaacattccttcacttcc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_k03.g1 MSMg01no357_k03.g1 CHROMAT_FILE:
MSMg01no357_k03.g1 PHD_FILE: MSMg01no357_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:41 2005
         (542 letters)



>mm_chr5_74118627_74119568
          Length = 942

 Score =  978 bits (506), Expect = 0.0
 Identities = 533/542 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatgctatactcccactgatagggacgtgtcttaactttctgttcagttttaaagac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aagaatgctatactcccactgatagggacatgtcttaactttctgttcagttttaaagac 260

                                                                       
Query: 61  tcaaaagcagcagtagcagacagtacaaactgagggaaggctgctggtagctcagaccac 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaggcagcagtagcagacagtacaaactgagggaaggctgctggtagctcagaccac 320

                                                                       
Query: 121 tgacacgctaagagtatcatctccaggcatgggtccacccacctttacatacaggttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacacgctaagagtatcatctccaggcatgggtccacccacctttacatacaggttcct 380

                                                                       
Query: 181 aggacaaggggagagaggcgagtcacacattgcacttcctttgtggcagctgaccttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aggacaaggggagagaggcgagtcacacattgcacttcctttgtggcagttgaccttaga 440

                                                                       
Query: 241 accgtcagtcgggaaggtggcagtaaactatgagctgagctcgatgtctggcccttcacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgtcagtcgggaaggtggcagtaaactatgagctgagctcgatgtctggcccttcacg 500

                                                                       
Query: 301 agtgacacagaatgatgtctgtttttctgtaaggggctgaagagatgaatttcccacagt 360
           |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 501 agtgacacagaatgatgtctgtttttctgtaaagagctgaagagatgaatttctcacagt 560

                                                                       
Query: 361 gggagacacagtgatgactacggctgtcactgaggagagcggaagcaggccagcaccagt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagacacagtgatgactacagctgtcactgaggagagcggaagcaggccagcaccagt 620

                                                                       
Query: 421 cagagtgctcttagcaactgggactctgtctgcactttgacatctagccaggcttatgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 cagagtgctcttagcaactgggactctgtctgcactttgacatctagccagtcttatgtc 680

                                                                       
Query: 481 taattctgaaaagcttagtgacattttagagaaaagacgaactatctggtaggtgtaaag 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taattctgaaaagcttcgtgacattttagagaaaagacgaactatctggtaggtgtaaag 740

             
Query: 541 ac 542
           ||
Sbjct: 741 ac 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)