Query= MSMg01no357_k18.b1 MSMg01no357_k18.b1 CHROMAT_FILE:
MSMg01no357_k18.b1 PHD_FILE: MSMg01no357_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:44 2005
(517 letters)
>mm_chr5_75790822_75791738
Length = 917
Score = 574 bits (297), Expect = e-168
Identities = 322/335 (96%), Gaps = 9/335 (2%)
Strand = Plus / Minus
Query: 5 gaattcctggagactcatgagctagagagtcagcctggtgtgtgtactactcacaacaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaattcctggagactcatgagctagagagtcagcctggtgtgtgtactactcacaacaga 267
Query: 65 gatcctgtaacaaacaaggtgaagggaaaaggccaactctgacctccccaaatatcctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatcctgtaacaaacaaggtgaagggaaaaggccaactctgacctccccaaatatcctgt 207
Query: 125 ggcacacacacacacacacacacatacacacactcatatgttgtggtgataatggttctc 184
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gg--------cacacacacacacatacacacactcatatgttgtggtgataatggttctc 155
Query: 185 atagactctcatagataatggttctcatattttcatacttagttctcagttggtgaacca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 154 atagactctcatagataatggttctcatattttcatacttagttctcagttggtggacca 95
Query: 245 ttgatgggttttgaggtttcaagagcccatactagacttccagactttcggatcaggttg 304
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 94 ttgatgggttttgaggtttcaaaagcccatactagacttccagactttcagatcaggttg 35
Query: 305 taaactctctgccccatgcctacctgcctgctgcc 339
|||||||||||||| | ||||||||||||||||||
Sbjct: 34 taaactctctgccc-acgcctacctgcctgctgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_k18.g1 MSMg01no357_k18.g1 CHROMAT_FILE:
MSMg01no357_k18.g1 PHD_FILE: MSMg01no357_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:44 2005
(436 letters)
>mm_chr5_75616876_75617714
Length = 839
Score = 791 bits (409), Expect = 0.0
Identities = 431/439 (98%), Gaps = 3/439 (0%)
Strand = Plus / Plus
Query: 1 acatcctgtatttatttgacttttcatgagaagtaaaacctttggtgaggagggtcttgt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acatcctgtatttatttgacttttcatgagaagtaaaacctttggcgaggagggtcttgt 260
Query: 61 ggggaaggtatctgggggttatacggtgccaactgaagccagtacaagaacgcaggggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaggtatctgggggttatacggtgccaactgaagccagtacaagaacgcaggggct 320
Query: 121 gataagcattgttgagactgcattcaggagttggcgt-cccggaagtccgtgctgtgcag 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gataagcattgttgagactgcattcaggagttggcgtgcccggaagtccgtgctgtgcag 380
Query: 180 atgttaatcacagttacttgtggatgagacagctagccagaaggagctggatccgcagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 atgttaatcacagttacttgtggatgagacagctagccagaaggagctggatccgtagaa 440
Query: 240 cgaggggcgtgctgggtcctgcgaattctctgaccataaacgagagacacaatgatcaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaggggcgtgctgggtcctgcgaattctctgaccataaacgagagacacaatgatcaaa 500
Query: 300 aaggcaccccgaagcaggaaaacgtgtaccccaggtagaacacttttggctaaaagtaaa 359
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtaccccgaagcaggaaagcgtgtaccccaggtagaacacttttggctaaaagtaaa 560
Query: 360 gggtggaaaaaaaaa--ccctctgcttcctgagcaaccccatttccagaagaataggccg 417
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtggaaaaaaaaaacccctctgcttcctgagcaaccccatttccagaagaataggccg 620
Query: 418 ctccgactccaggtagaaa 436
|||||| ||||||||||||
Sbjct: 621 ctccgattccaggtagaaa 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 839
Length adjustment: 9
Effective length of query: 427
Effective length of database: 830
Effective search space: 354410
Effective search space used: 354410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
