BAC Information

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BAC

Clone NameMSMg01-357L22
Chromosome5 (Build37)
Map Location 43,999,632 - 43,999,859
singlet/doubletsinglet
Overlap geneC1qtnf7
Upstream geneLOC433883, EG665934, Cpeb2, 4833430A08Rik
Downstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L22.T7 (MSMg01no357_l22.b1)MSMg01-357L22.TJ (MSMg01no357_l22.g1)
ACCAG467569AG467570
length796799
length of high quality
(start - end)
418 (42 - 459)229 (69 - 297)
definitionCHROMAT_FILE: MSMg01no357_l22.b1 PHD_FILE: MSMg01no357_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:49 2005CHROMAT_FILE: MSMg01no357_l22.g1 PHD_FILE: MSMg01no357_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCTATAAAACTGCTACATTCACTCCAGTAGTGACAAGCACGACAGGCCC
TGAAAACCTGGGCGCTGTCCCGAGGCAAAAAGTTCACGGAAACTTAGTCT
CTTGGAATCATGGCATCCTGTATAAAGAATGCTCCAATGTCCTTGCTTTA
GTTGGTAAACGGATCTGTGTGCTTTCCCTTAATATTGCTTTATTGCAAGT
GCTCCTAAGGATTGATTTTTTGACATATAGCTAAATTAGATTCTAGGCAG
TCCTTGATCCAACCTTGGGCATGGATAGCTGAGTCACTGCCCTACACAGA
AATTTACCATTATCTAGGAAGAAGGAAGTTTGTGATCTAAGAAGGAACCA
GAGTAGATACTTAGAACTATAGATAGCTGAGATACAGCCATACACAAGTA
TTTACTATGGCCTACGGGGAAGGTAGACTATACAATAGACTAGAATAGGA
ACCATGGCAAGGGCACCCAAGAAGCCCTGAACCTGCGTTTCTAAAATAAA
ATGGACCCTAAGGGGAAGTTGGTTTTTATCCCACTTGTAAAATTGAAATT
TTATCCCCCCTGGGTCCTGGCAACCCCTTCCAGGGTGGTTTCCCCGGCTT
TGGCGAAAAAATTTTAACTTGGCCGGATGTGGCTCACTTTCCTACCTTTA
TACCATTTTTGGCGTATCCTTTCCCACCTATTCTAATCCTCTATCCTCTG
CGGTTTCCCCCTTCCCTTTCCTATATCTCTTTCCTTTTCAATAAAC
GATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGAGAAACGGATGGGTGAGTGCAAAAATGAGG
GGGATGCGACACAGTGTTGCATTGGCAAAACTCTGAAAACAACTTCTACA
CATACAAGAAAAGAGGGAGAAAGATGGTAATTAATGTTATAGATAATTGG
TCCAGTAAGAGGTTAAATCAATGTTAAGTTAAAAAAAAAAAAAAACAAGG
TTCTAAATCACAGGATTGGCACAATATCACCTTTCTTCACAACCCAGACA
CTTACAAGACTGAAAATAAGTATATAGTAACCTGTCAGGGGCAATTAATT
ATCCCTGCATAATGGCAACTGTGCTGGTATTTATCTAAGTCGTTTGAATA
TGTCATTTTCCTTTTCTAATAAATTAGCCTTGCAAGAAGGAAAGTTATGT
TTTGCTAAGACTATCCATTCTTTCGGAATAAATGCAGCAAAGAAATGTGT
TTAGAGGGTTTCACCCCCCCTCGACTCCGGTCAATGTGTAAGGGATAGAG
TATTCTGGCCACCGGGGATTGAGGGTTTCTTAATCCAAAAAAAAAAAAAG
GGTTTTAATATTAAATAAACAATTGCCTAAAGGGAATGGGTATCCGCCCT
TTTTTTTGTTCCCCCTAAATCTCCAAGGGCGAAAACTCTCCCCGGAAGAA
CACCGAGAGGCTTTTAATCTCCTCTTTACCCCCAAAAAAAATGTCTCGCT
CTCCCCCCCTATTTCTCTCTCCTTTGTCTACGTGCTTCACCTCCCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l22.g1 MSMg01no357_l22.g1 CHROMAT_FILE:
MSMg01no357_l22.g1 PHD_FILE: MSMg01no357_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:49 2005
         (229 letters)



>mm_chr5_43999432_44000059
          Length = 628

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%), Gaps = 1/229 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaaacggatgggtgagtgcaaaaatgagggggatgcgacacagtgttgcattggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaaacggatgggtgagtgcaaaaatgagggggatgcgacacagtgttgcattggcaa 260

                                                                       
Query: 61  aactctgaaaacaacttctacacatacaagaaaagagggagaaagatggtaattaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactctgaaaacaacttctacacatacaagaaaagagggagaaagatggtaattaatgtt 320

                                                                       
Query: 121 atagataattggtccagtaagaggttaaatcaatgttaagttaaaaaaaaaaaaaaacaa 180
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 atagataattggttcggtaagaggttaaatcaatgttaagttaaaaaaaaaaaaaa-caa 379

                                                            
Query: 181 ggttctaaatcacaggattggcacaatatcacctttcttcacaacccag 229
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttctaaatcacaggattggcacaatatcacctttcttcacaacccag 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 628
Length adjustment: 9
Effective length of query: 220
Effective length of database: 619
Effective search space:   136180
Effective search space used:   136180
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)