BAC Information

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BAC

Clone NameMSMg01-359C01
Chromosome5 (Build37)
Map Location 126,403,990 - 126,404,558
singlet/doubletsinglet
Overlap genenone
Upstream gene3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736
Downstream geneLOC100039178, LOC665760, LOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359C01.T7 (MSMg01no359_c01.b1)MSMg01-359C01.TJ (MSMg01no359_c01.g1)
ACCAG468616AG468617
length718758
length of high quality
(start - end)
562 (56 - 617)162 (62 - 223)
definitionCHROMAT_FILE: MSMg01no359_c01.b1 PHD_FILE: MSMg01no359_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:34 2005CHROMAT_FILE: MSMg01no359_c01.g1 PHD_FILE: MSMg01no359_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCATTAG
CTACAAACCTGGAGTCACCATCCGGACAGGGTACACTAGAAAGAGAGCTC
TCTGTGTCCCTTCCTTTGATTGCCAAACTGTTGAAACCATGAGCCCCAGA
GAATTAAAAATTTCCTAGGAGTCTTGTACTGGAGGAAGGAAAGTGAAGCC
TGGGGCCAGCTGGGGGTGGGGGACCTTGTTTCCTAGGAAGAGACTCCACA
CAGGTCTGACCTGTCAGGTCATCTTGCATGGACAGTGAGGGGTCAGGGAT
GGGCAGTTTCCATTTGGACCAAGTCTGCTTGGCGATGTACCTCTCTTGCC
TTCTTTAGAACCTGAAGCTCACACTAGGACCTCAAGGCTCTACTTGGGGT
TCACCAGACTATGTTATCTGTTCCTCTTTCCAATGTGATCACATTGAATA
AGGCCTTTCCCAGAGTTTCACTGTTGTGGACTCTTTAATTGATGTGTACA
AGGTATGTGACTGAACCTGTTTCATCAGGGCTGCCAGAGACCTGAGCTTT
GACACACACATGCACATGCACACGCACGCGCACACACACACACAGAGCTC
TAGAAACCCCTGGAGGATACAGCCTCAAATGAGATTCATGCTGGACCTCC
TGAGATCCAGGCAGAGGGATGAATAAGCAACGCTCCTCCTGTGTGTCAAA
TCAATGATTTCATGATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAAGATGATTTATTTGGACCTTGTAAGAACAAAAACAAA
AAAGGAATTGGGGAGATTGGCTCCTTGGGTAAAGTTCCTCCCACGCAAAC
ACAAGGGCCTGAGTTCAGTTCCCCAGAGCCCACACAAAGCCAGACTTAAT
AGCACACATCTGTAATGTCANNGTTTGGTTTCAAGTGGGGGTTAAGACTC
GAGTAGAGACCAGGGAATCTCAGAAGCTCACTGATCACTTAGCCTGCATT
CATGTGGGGAACAAAGGAAAGAGATCTGGCTCAAGGGGGAAAAAAAAGAC
GGGGGCGCCAACCAAAAACTTCTTCAGAAACTTCTAAAATAACCCTGGGG
GGGGGCCCAAAANNGGGAGCCGGGTTCCCAATCCCGGGGAGGCACATTAT
TATCCCTTGGAAAAACCACACCCCCGCCCCCCCTCCCCCNCNNCNCCCCN
NNNNNNNNNNNNNNNNNAAGGAGTAGGGAGNTGNNNNNNNNNNNNNTAGG
AGGAATAAAAGCGCANNAAAAAAANNNNNCGTAGCAAATTTTTTGTNNNN
TNCCCGTGGGGTGTGTGTGGGGCCCCCGGCAGCATACCTTTTTCCCACGG
GNTTTGTTGGTGAAAGTGAGCCCACGCCAAAAGCGTAAATAGTAGGTTCC
TTTTTTCTTTGGCGGGNGCCCTTCTCCTCTTTCCCCCCCGTAGCCATGTT
CTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_c01.b1 MSMg01no359_c01.b1 CHROMAT_FILE:
MSMg01no359_c01.b1 PHD_FILE: MSMg01no359_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
         (562 letters)



>mm_chr5_126403790_126404754
          Length = 965

 Score = 1019 bits (527), Expect = 0.0
 Identities = 556/569 (97%), Gaps = 7/569 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctggagtcaccatccggacagggtacactagaaagagagctctctgtgtcccttcct 60
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aacctggagtcaccatctggacagggtacactagaaagagaactctctgtgtcccttcct 260

                                                                       
Query: 61  ttgattgccaaactgttgaaaccatgagccccagagaattaaaaatttcctaggagtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattgccaaactgttgaaaccatgagccccagagaattaaaaatttcctaggagtctt 320

                                                                       
Query: 121 gtactggaggaaggaaag---tgaagcctggggccagctgggggtgggggaccttgtttc 177
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactggaggaaggaaagcattgaagcctggggccagctgggggtgggggaccttgtttc 380

                                                                       
Query: 178 ctaggaagagactccacacaggtctgacctgtcaggtcatcttgcatggacagtgagggg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggaagagactccacacaggtctgacctgtcaggtcatcttgcatggacagtgagggg 440

                                                                       
Query: 238 tcagggatgggcagtttccatttggaccaagtctgcttggcgatgtacctctcttgcctt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagggatgggcagtttccatttggaccaagtctgcttggcgatgtacctctcttgcctt 500

                                                                       
Query: 298 ctttagaacctgaagctcacactaggacctcaaggctctacttggggttcaccagactat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 ctttagaacctgaagctcacactaggacctcaaggctctacttggggttcaccagactac 560

                                                                       
Query: 358 gttatctgttcctctttccaatgtgatcacattgaataaggcctttcccagagtttcact 417
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attatctgttcttctttccaatgtgatcacattgaataaggcctttcccagagtttcact 620

                                                                       
Query: 418 gttgtggactctttaattgatgtgtacaaggtatgtgactgaacctgtttcatcagggct 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgtggactctttaattgatgtgtacaaggtatgtgactgaacctgtttcatcagggct 680

                                                                       
Query: 478 gccagagacctgagctttgacacacacatgcacatgcacacgcacgcgc----acacaca 533
           ||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||
Sbjct: 681 gccagagacctgagctttgacacacacatgcacatgcacacgcgcgcgcgcacacacaca 740

                                        
Query: 534 cacacagagctctagaaacccctggagga 562
           |||||||||||||||||||||||||||||
Sbjct: 741 cacacagagctctagaaacccctggagga 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 965
Length adjustment: 10
Effective length of query: 552
Effective length of database: 955
Effective search space:   527160
Effective search space used:   527160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)