Query= MSMg01no359_c05.b1 MSMg01no359_c05.b1 CHROMAT_FILE:
MSMg01no359_c05.b1 PHD_FILE: MSMg01no359_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(560 letters)
>mm_chr5_59233551_59234512
Length = 962
Score = 1035 bits (535), Expect = 0.0
Identities = 553/561 (98%), Gaps = 6/561 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtgatttcc--aggcatacttgtgctggcaaatgaatttttttgcttcatga 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 ggaattcagtgatt--caaaggcatacttgtgctggcaaatgaatttttttgcttcatga 885
Query: 62 agggatcattggatggaacacagtgcccccaatgaaggagctagagaaagtacccaagga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 agggatcattggatggaacacagtgcccccaatgaaggagctagagaaagtacccaagga 825
Query: 122 actgaagaggtctgcaactctataggtgggacaacaatatgaactaaccagtacccccag 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gctgaagaggtctgcaactctataggtgggacaacaatatgaactaaccagtacccccag 765
Query: 182 aggctcaattgcaggaagtatgctaagcttacatgaggacagacagtttgatgtatttaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aggctcaattgcaggaagtatgctaagcttacatgaggacagacagtttgatgtatttaa 705
Query: 242 aaatttttaaaggtagcagcttgaggtccaaacatatacacacacacacatacacactga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaatttttaaaggtagcagcttgaggtccaaacatatacacacacacacatacacactga 645
Query: 302 gattttatagatatata--aaatctaattttgtttttatacaaaagatatggctaaagga 359
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gattttatatatatatataaaatctaattttgtttttatacaaaagatatggctaaagga 585
Query: 360 aattaagaagaatcatataatatctataatatcttctggtccaaatgggtcaatgtattg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aattaagaagaatcatataatatctataatatcttctggtccaaatgggtcaatgtattg 525
Query: 420 tagaacaaatctagcaaatctatattcaaagattctttaggtacactgaatgaaaatatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tagaacaaatctagcaaatctatattcaaagattctttaggtacactgaatgaaaatatg 465
Query: 480 agatgcattctgtattactctgtacaaattatggaaataatgacatcattttattccttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agatgcattctgtattactctgtacaaattatggaaataatgacatcattttattccttt 405
Query: 540 gtataccaaaatttctactaa 560
|||||||||||||||||||||
Sbjct: 404 gtataccaaaatttctactaa 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 962
Length adjustment: 10
Effective length of query: 550
Effective length of database: 952
Effective search space: 523600
Effective search space used: 523600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_c05.g1 MSMg01no359_c05.g1 CHROMAT_FILE:
MSMg01no359_c05.g1 PHD_FILE: MSMg01no359_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:34 2005
(491 letters)
>mm_chr5_59052119_59053009
Length = 891
Score = 903 bits (467), Expect = 0.0
Identities = 486/493 (98%), Gaps = 2/493 (0%)
Strand = Plus / Plus
Query: 1 actagagtcttggcaggctaatagctaaaggctgcgatatttgaaactcagatctgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagagtcttggcaggctaatagctaaaggctgcgatatttgaaactcagatctgaact 260
Query: 61 actgtctgctaggtgctgagccattggtactcaaaacctagagaaatgtctgtgcctata 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 261 actgtctgctaggtgctgagccattgatactcaaaacctagagaaatgtctgtccctata 320
Query: 121 agttcttagctttgaaagcctattgacatgagccataattctttagaccttaaggcctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcttagctttgaaagcctattgacatgagccataattctttagaccttaaggcctag 380
Query: 181 atccattagttgataacactatggagctctcacaaaaagggacttatcatgactgcactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccattagttgataacactatggagctctcacaaaaagggacttatcatgactgcactg 440
Query: 241 gaaagactcaaaaagcaagtgaaagagtcagatgcatatatttgcacccaaccaatggac 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagactcaacaagcaagtgaaagagtcagatgcatatatttgcacccaaccaatggac 500
Query: 301 agaagcagctgacctctgttgttg--aattagggaaggctgaaagaatttgaggagaaag 358
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 501 agaagcagctgacctctgttgctgggaattagggaaggctgaaagaatttgaagagaaag 560
Query: 359 gtgatcctatagaaggtccatcagtcttaattaatctggacccctgaaatctctcaaaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgatcctatagaaggtccatcagtcttaattaatctggacccctgaaatctctcaaaca 620
Query: 419 ctggactaccaaacaaacacatacaccagctgatataaggcctccaacaaacatacagta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggactaccaaacaaacacatacaccagctgatataaggcctccaacaaacatacagta 680
Query: 479 gaggacttccaga 491
|||||||||||||
Sbjct: 681 gaggacttccaga 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
