BAC Information

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BAC

Clone NameMSMg01-359D10
Chromosome5 (Build37)
Map Location 28,723,325 - 28,723,620
singlet/doubletsinglet
Overlap genePrr8
Upstream geneDpp6, Speer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1
Downstream geneShh, LOC100039258, Rnf32, EG664949, Lmbr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D10.T7 (MSMg01no359_d10.b1)MSMg01-359D10.TJ (MSMg01no359_d10.g1)
ACCAG468682AG468683
length759761
length of high quality
(start - end)		306 (29 - 334)378 (58 - 435)
definitionCHROMAT_FILE: MSMg01no359_d10.b1 PHD_FILE: MSMg01no359_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005CHROMAT_FILE: MSMg01no359_d10.g1 PHD_FILE: MSMg01no359_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTTTGCTAGA
AGCTCTTGACTAATAGTAGGGTAAAAGTACAATATATAGCTTATAAAGTT
TCTTAAAGAAAACTTAATGTGTTTTCTTTTTGATTCTTATTTTTTAGGAG
GTGGGGTGGTTTCTTACTGTTTCCTAGAGTGGTCTCAAACTTGTTACCCT
CCTCCCTCAGCCGCTTGCATTCTTGGATTGCAGGCATGCACCACACACAC
ACACACACACACACACACACACACACACACACACACACACACCCCTTGGA
TTGCAGGCATGCACCACACACACACACACACTCACACACACACACACACA
CACACACACACACACCCCTTGCATTGCAGGTATGCACCACACCCATCATA
CACACACATACACGCACACGTGTGCACATACTTGACCACATATGTCTCGT
CTGTCTGTACACATTGTTTCCCCACGATCCTATGTGACCTTTCCCCCGGT
TGGCTTTACTTGCCCTCTCCCTTCCTTCCCACACCTCTAACCCGCCGCTT
CTCTCGAACATCGCCCCTGCTCCCCTTTTCCCCTCCTTCCCCCCTCCCCT
CTTTTCCCCCTTCCCTCTTTCCCCCCCCCCCCCCCTTTTCTCTCCTTTAC
TTCCTTTCCCCCCTTTTCCACACTTTTTATTCTCCTCTCTTAACTTTCTT
TCATCTTTTACCGCGCCCTTTTTATACCCCTTCTCCTTTCTTCTCTACTT
CTTCTCCGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTTTTTAGTT
TTCTGGAGTCCAACTTCTTGAGTTCTTTATATATATTGGATGATAGCCAC
CTATCAAATTTAGTATTAGTAAAGATCTTCCCCCAATCTGTTGGTTGCCC
TTTTGTCTTATTGACAATGTCCTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGGGCCTATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGGTGTT
CTGTTCAGGAATCTTTCCCCTGTGCCCATATCTTCCAGGCTCTTTCTCAT
CTTTGTCCTCTATATGATTCAGTGTCTTTGGTATTATGTGGAGTTCTTTG
ATCCACTTANACTTGAGATTTGTGCAAAGAAATAAGAATGGATCAATTCG
TATTCTTCTACATGCTTACCGCCAGTTGAGCCAGCACATTTTGTGGAAGG
GTTATCTTCTCTTCACGCATGTTTTCAGATTCTTTGGCCTACACTCAGTG
TGTCTTTTTTTTTTGTTCCACTTCTTTTTATTTTCCTTTTTTTCCTTCTT
TTTTTTTTTTTATTTCCCTTTTCTCACCTTCTTTTATCTTCCCTTTCTTC
TTCTTCCCTTTTCATATTTTTCTCTTTTTACCCTCTTTTCCTCCTTTTTT
TTTGTTTCTCTCCTCCCTTCTTTTTTCCTTTCTCCCTCCCATTTTTTTTT
TTCCTCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d10.b1 MSMg01no359_d10.b1 CHROMAT_FILE:
MSMg01no359_d10.b1 PHD_FILE: MSMg01no359_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:40 2005
         (306 letters)



>mm_chr5_28723121_28723826
          Length = 706

 Score =  538 bits (278), Expect = e-157
 Identities = 293/300 (97%), Gaps = 5/300 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattttgctagaagctcttgactaatagtagggtaaaagtacaatatatagctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattttgctagaagctcttgactaatagtagggtaaaagtacaatatatagctt 264

                                                                       
Query: 65  ataaagtttcttaaagaaaacttaatgtgttttctttttgattcttattttttaggaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataaagtttcttaaagaaaacttaatgtgttttctttttgattcttattttttaggaggt 324

                                                                       
Query: 125 ggggtggtttcttactgtttcctagagtggtctcaaacttgttaccctcctccctcagcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggtggtttcttactgtttcctagagtggtctcaaacttgttaccctcctccctcagcc 384

                                                                       
Query: 185 gcttgcattcttggattgcaggcatgcaccacacacacacacacacacacacacacacac 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttgcattcttggattgcaggcatgcaccacacacacacacacacacacacacacacac 444

                                                                       
Query: 245 acacacacacacacacacaccccttggattgcaggcatgcaccacacaca-cacacacac 303
           ||||||||||||||||    | |||||||||||||||||||||||||||| |||||||||
Sbjct: 445 acacacacacacacac----ctcttggattgcaggcatgcaccacacacatcacacacac 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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