BAC Information

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BAC

Clone NameMSMg01-359D13
Chromosome5 (Build37)
Map Location 12,947,730 - 12,948,021
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D13.T7 (MSMg01no359_d13.b1)MSMg01-359D13.TJ (MSMg01no359_d13.g1)
ACCAG468687AG468688
length738771
length of high quality
(start - end)		306 (27 - 332)351 (56 - 406)
definitionCHROMAT_FILE: MSMg01no359_d13.b1 PHD_FILE: MSMg01no359_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005CHROMAT_FILE: MSMg01no359_d13.g1 PHD_FILE: MSMg01no359_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGCAGCACAAAG
TATCTGTCACACAACCTCATTTAATGGCACAAATCTATAGTCCTGGCACC
AATATGCTGAGACACAGAGTTGCAAATAAGAGGCTGAAGCCATTATGGCT
ATAAAATGAGTTGACTTCAAAGTCACCCCAAGTCACCACCCCCCCTCAGA
AAGAAAGGAAGAGAGACAGGGTAGGGAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGTNNTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTNTTTTTTATTTTTTTTTTTTTTTTCCCCTNNA
TATAATTTATTATATTATATAATTTTTTTTTAAATTTATCTAAATAAATA
ACTCACTTTTTTTCTTTTATTTCCCTTCCTTCTTCACCCTTTTTTATACT
ATTTTCTTCCTACATTTATCCTTTGTCACCCCCTTTTCTTCCTATTTTTT
TTTTCCCCTTTACTCTTCCCCCCCCCCTCTTTTTTTTTCCCTTTTCTTTT
CCCTTTGTTTTTCTATCCCCTTTTCTTTCCCCCCAATTTTTTATTCTCCT
AGCTTCTCCTTTTTTTTTTTTACTTCCCTTTTTTCTTCTCCTTATTTTTC
TTTTTTCTCTTTCCCCTTTTTTTTCCCGCTTTTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGCTTCTTGAGCTCTTTGGATATATTGAATATTATTCCCCTATCA
GATTTAGGATTGGTAAAAATTATTTCCCAATCTGTCGGTGGCCTTTTTGT
CTCATTGACAGTATCTTTTGCCTTACAAAAGCTTTGCAATTTAATGAGGT
CTCATTTGTCAATTCTTGATCTTAAAGCACAAGCCATTGCTTTTCTATTC
AGGAATTTTCCCCCTGTGCCCATATCTTCGAGGCTTTCCCCCACTTTCTC
CTCAATAAAATTCGGTGTCTCTGGTTTTATTTGGAATCTTTGATCCACTT
AGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCTCATTCTTC
TACAGGATAACCATCAGTCATGCCAGAACCACTCTGCTGAAAAATTGTCA
TTTTTTCACCTGAACGGTTTTAGCTTCCCTTGCTAATACTCACCGATCAT
ATTTGCGTGGGTATTATTTCCCCGTACTCCCCTTCTTTTTTTCCCTCCCA
TTTTACCCCTTTAATTATTTTTTTCATTGCCCCCCCCATTCATCCTTTCT
TCCTTTTTTTTTTTATTCCCTCTTTTTCCTTTCTCCTCCTTTTCTCCCCC
TTTCGTCCTTCCACTTTTTATACTTTATTATCCCCTCTTCTCTTTCTTTT
ATTTTTCCTTATCGCTTTCTCCCCGCTTTATACTTTTCTATGACTCTTTT
CCCTTTCTATTTTCTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d13.b1 MSMg01no359_d13.b1 CHROMAT_FILE:
MSMg01no359_d13.b1 PHD_FILE: MSMg01no359_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:40 2005
         (306 letters)



>mm_chr5_12947651_12948356
          Length = 706

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgcagcacaaagtatctgtcacacaacctcatttaatggcacaaatctatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaattcagtgcagcacaaagtatctgtcacacaacctcatttaatggcacaaatctatag 312

                                                                       
Query: 65  tcctggcaccaatatgctgagacacagagttgcaaataagaggctgaagccattatggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcctggcaccaatatgctgagacacagagttgcaaataagaggctgaagccattatggct 252

                                                                       
Query: 125 ataaaatgagttgacttcaaagtcaccccaagtcaccaccccccctcagaaagaaaggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ataaaatgagttgacttcaaagtcaccccaagtcaccaccccccctcagaaagaaaggaa 192

                                                                       
Query: 185 gagagacagggtagggagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gagagacagggtagggagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa 132

                                                               
Query: 245 agaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga 296
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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