BAC Information

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BAC

Clone NameMSMg01-359E18
Chromosome5 (Build37)
Map Location 56,434,823 - 56,435,231
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359E18.T7 (MSMg01no359_e18.b1)MSMg01-359E18.TJ (MSMg01no359_e18.g1)
ACCAG468744AG468745
length767768
length of high quality
(start - end)		449 (26 - 474)409 (55 - 463)
definitionCHROMAT_FILE: MSMg01no359_e18.b1 PHD_FILE: MSMg01no359_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:45 2005CHROMAT_FILE: MSMg01no359_e18.g1 PHD_FILE: MSMg01no359_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAACAGAGGGATCA
CAAATGGCTGAGAAGCACCTAAAGAAATGTTCGAAGTCCTTAGTGATCAA
AGAAATGCAAATCAAAACGACCCTAAGACTCCACCTTACCTCAATCTGAA
TGGTTAAAATCAAAACCTCAGGTGGTAATACATTTTGGAGAGGATGTAGA
GAAAGAGGACCACTCCTCCATTGCTGGTGGGATTGTAAACTTGTACAACC
ACTCTGGTAATCAATCTTGAGGTTCCTCTGACAATTGGAACTAGACCTAG
CAAAACCACTCTTGGGAATTGTTGCCTCACCATATCACAGGGACACATGT
TCCCTTATGTTCATAGAGGCCTTGTTTATAAAAGCCAGAAGCTAGAAACA
ACCCAGATGTCCTACCAGGACTGAAGAATGGATACAGAAAATGTGGTTCA
TTTACCCAATGAAATACTACTAAGCTATTACGAATGAGGACATTCTGAGA
TTTGTAGGAAAATGGATGGAACTAACATATATCATCCTGAGTGAAGTAAA
CCTGATCCAAAGGACATGGTTGGATCCCCTACAAATTCCATTTTGCCCCA
AAAAAGGTCTAATAACCCCCAAATAGTCTTCCAAATCTTAAAATCTCCCC
AAGGGAGGGGAAAAATAACTCTCCAAACGGGACTCTTAGGGTAGGGCTTG
GGTGGTGGGGATTCTACCTTAACTTTCTTTCCTCTTACACATATACTTTC
ACAGACCTACTACCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGAGATTATTTAAAGATTCCGTGTCATGGGAGATATAGAAATTTC
ACATGGTGCAAGTGAGATGATTTAGATAAAATAGATAATCCTTGCAAAAG
GTGCATGGTATTGGGCACATCTGACCTTCACTTGCTAAAAATAAAATGTA
ATTTTCTTAAATCTGGCTCAATCTTCTAGGGAGTCAGGATGAGTAAAATA
CTTTCTCAAAGCAAGTTCTTCATAGTTGAAAGGTAAATTGCCTCTCCCGA
GGCACAAAGAAGAACTAATAAACCAGGGAAAAGGTAATTTCTCTGGGAAT
TTCTTCCAGAAGAGTTGGCTAAGCAATAGAGCATTCTATACACCAAAAGT
TTTCACAAATAATACTTCAATAAAGACAAATATTACATTGGGTTTTCATC
CAAAGCTGAAATCTAGTTTAGTTGTCAGTATATTCCTTAAAATATGAATA
AATTAATTCTCAACTTTATCCTCCTTTGAAAAGGACACTATATTGAAGAC
ACATGATTAATGGATATTACACCCTAAATGCCGTGACTACAAAAGTGGCA
AACTTTTCTCCGCGTTACAACACTACATTTATGACCTGGTTATTCTTTTC
CTCAAAACACTCTTGTCATCCCCGGGCATTATTTTCGCTTTTCTTTTTTC
CCTCTAAATTCCGTTCAGTGCCTATTTTTTTTTTCAACTTCGCCTTTTAT
TTTACGTACCTCTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_e18.g1 MSMg01no359_e18.g1 CHROMAT_FILE:
MSMg01no359_e18.g1 PHD_FILE: MSMg01no359_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:46 2005
         (409 letters)



>mm_chr5_56434623_56435431
          Length = 809

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagattatttaaagattccgtgtcatgggagatatagaaatttcacatggtgcaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttgagattatttaaagattccgtgtcatgggagatatagaaatttcacatggtgcaagtg 550

                                                                       
Query: 61  agatgatttagataaaatagataatccttgcaaaaggtgcatggtattgggcacatctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agatgatttagataaaatagataatccttgcaaaaggtgcatggtattgggcacatctga 490

                                                                       
Query: 121 ccttcacttgctaaaaataaaatgtaattttcttaaatctggctcaatcttctagggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccttcacttgctaaaaataaaatgtaattttcttaaatctggctcaatcttctagggagt 430

                                                                       
Query: 181 caggatgagtaaaatactttctcaaagcaagttcttcatagttgaaaggtaaattgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caggatgagtaaaatactttctcaaagcaagttcttcatagttgaaaggtaaattgcctc 370

                                                                       
Query: 241 tcccgaggcacaaagaagaactaataaaccagggaaaaggtaatttctctgggaatttct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 369 tcccgaggcacaaagaagaactaataaaccagggaaaaggtaatttctctaggaatttct 310

                                                                       
Query: 301 tccagaagagttggctaagcaatagagcattctatacaccaaaagttttcacaaataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tccagaagagttggctaagcaatagagcattctatacaccaaaagttttcacaaataata 250

                                                            
Query: 361 cttcaataaagacaaatattacattgggttttcatccaaagctgaaatc 409
           ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 249 cttcaataaagacaaattttacattgggttttcatccaaagctgaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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