BAC Information

Click to search

BAC

Clone NameMSMg01-359F06
Chromosome5 (Build37)
Map Location 148,802,886 - 148,803,269
singlet/doubletsinglet
Overlap geneC130038G02Rik
Upstream geneLnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneLOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F06.T7 (MSMg01no359_f06.b1)MSMg01-359F06.TJ (MSMg01no359_f06.g1)
ACCAG468768AG468769
length750770
length of high quality
(start - end)
499 (28 - 526)384 (58 - 441)
definitionCHROMAT_FILE: MSMg01no359_f06.b1 PHD_FILE: MSMg01no359_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:48 2005CHROMAT_FILE: MSMg01no359_f06.g1 PHD_FILE: MSMg01no359_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAGGAATGAAG
ACCCTATTAAAGACAATAAAGCAGATTTTTAAATAATAATTTATTTTTTT
AAATTATAGTAAAATTATATTATTTCCCTCTCCCTTTCCTCTCTTCAACC
CTTCCCATGCAACCACTATGGTATCTCTCAAATTCATGATCTCTCTTTCC
TATAATTGTTGTTTTATGTATACATATGTATCATATATATCATATACATA
TGCTATATATAACACATACATATACACACACATACACATATATATCATAT
ACACACGCTATATATAACACATACACATATACACACATACACACATATAT
CATATACATACGCTATATATAACACATACACATATACACACATACACATA
TATATCATATACATACACTATATATAACACATACACACATACAGATATAT
GTTATATATATCATATACATATGCTATATATAACACATACACATATACAC
ACATACACATATATATCATATACACGCATACACATATATATCATATACAT
ACNCTATATATAACACATACACATATACACACCTACAGATATATGTTATA
TATCATATACATACNCTATATATAACACATACCCNTATACCCCCCTACAC
CTATATATCATATACCTACCCTATTTATAAAACATACACTTACCCCCTTA
CAGAAAGGGGTGAATATATCCTATACATATGCGATTAAAAAACCTACCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTGAGTTAAAACACATGAGCACACAGTAGGGTTCCCTTTCTT
TGTGAGTGCCTTCTATTTAGAGGGGCATGCTTGAGGTTTAGAGACAGATG
CATTTTAAGTTCCATTACGCTGATTCAACTCAATACAAATCAAAAGTCCT
AGCAAAGGGAAAATTAACTAATTGGTACTCTTCTGGGAACAAAGGTCTTA
TTTGGGCTATTTTCAGTTTAACTCATGGGCTAGACTATTTTATGTTACTA
TAATGACATGCCTGAGGCTGGATAGTCTTATAAAGAAGGGTTGATTAGAC
TAACAGGTTCTAGAGGTTAAGGGGCTGTTCATGGCCTTCTTGTAGGAGTT
CCTAGATAGTACAAGGCTTCACATGGCAAGAAACCGGGAACCTCTGGTCT
CCCTCTCCACCCTATAAAACTGCCAAAGTTCAATTGTGGAAGACTCCACC
TAAAGACTGTATTTAATCCCTGTCACCTCTCGGCCCCACCACTGGTCAAC
ACAGGAGGTTAAGTTTTCTCTCCCAATACTCCCCAATGCAAATTAAATTC
CTGCCTTTAAATTCTTGGGGAAACTTCTCCACCCTCTTTTTTTAAATCCT
TTGTAACCCGGCGCGTTAGAAAAAAAAAATTTTTTTGCTTCTCTTCCCAC
CTATATTCTCTCCTAAATTCCCTCCCGAAAATACGGCTTGCAGCTTCCCC
GCCTTTTACATTCCCCCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f06.g1 MSMg01no359_f06.g1 CHROMAT_FILE:
MSMg01no359_f06.g1 PHD_FILE: MSMg01no359_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:48 2005
         (384 letters)



>mm_chr5_148802686_148803469
          Length = 784

 Score =  704 bits (364), Expect = 0.0
 Identities = 379/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagttaaaacacatgagcacacagtagggttccctttctttgtgagtgccttctatt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agtgagttaaagcacatgagcacacagtagggttccctttctttgtgagtgccttctatt 525

                                                                       
Query: 61  tagaggggcatgcttgaggtttagagacagatgcattttaagttccattacgctgattca 120
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 524 tagaggggcatgtttgaggtttagagacagatgcattttaagttccattatgctgattca 465

                                                                       
Query: 121 actcaatacaaatcaaaagtcctagcaaagggaaaattaactaattggtactcttctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 actcaatacaaatcaaaagtcctagcaaagggaaaattaactaattggtactcttctggg 405

                                                                       
Query: 181 aacaaaggtcttatttgggctattttcagtttaactcatgggctagactattttatgtta 240
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 404 aacaaagctcttatttgggctattttcagtttaactcatgggctagcctattttatgtta 345

                                                                       
Query: 241 ctataatgacatgcctgaggctggatagtcttataaagaagggttgattagactaacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctataatgacatgcctgaggctggatagtcttataaagaagggttgattagactaacagg 285

                                                                       
Query: 301 ttctagaggttaaggggctgttcatggccttcttgtaggagttcctagatagtacaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttctagaggttaaggggctgttcatggccttcttgtaggagttcctagatagtacaaggc 225

                                   
Query: 361 ttcacatggcaagaaaccgggaac 384
           ||||||||||||||||||||||||
Sbjct: 224 ttcacatggcaagaaaccgggaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)