BAC Information

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BAC

Clone NameMSMg01-359J24
Chromosome5 (Build37)
Map Location 46,598,689 - 46,599,092
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J24.T7 (MSMg01no359_j24.b1)MSMg01-359J24.TJ (MSMg01no359_j24.g1)
ACCAG468995AG468996
length793783
length of high quality
(start - end)		471 (15 - 485)404 (54 - 457)
definitionCHROMAT_FILE: MSMg01no359_j24.b1 PHD_FILE: MSMg01no359_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005CHROMAT_FILE: MSMg01no359_j24.g1 PHD_FILE: MSMg01no359_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCTTAAAAGAGGACACTCCA
ATAGCTGAGAAACATTTAAAGAAACATTCGCCATTCTTAGCCTCCAGAGA
AATGCAAACTAAAACTACTTTGAGATTTCATCTTACACACATCAAGCAAA
GAGGGAACAATTATCCATTGCTTGTGGGAGTGCAAACTTGTACAGCTGCT
ATGGAAACAAATGTGGCAGTTTGTCAGAAAGATGGAATTCATCCACCTCG
AGATTCAGCAATATCACTCTCGGGCATGTATACTCAAAGAATGTTTCATC
CTACCACAGAGACACTTCCTTAACCATGTTACCAGATATTTGAAACAACT
TAGATGCACCTCAACAGGGAAAATGTGGTACATCTGCAGAGTAGAGTTTA
AATTCAACTGTTTAAGAAAAATCATGAGATTTGCTGGTAAAATGGATGGA
ACTAAGAAAAAAAATCATCCAGAGTTTGATATCCCAGACCCCAACAGATA
GATATGGTATATAGTCATTCATATGTGGATATTGGTTGTTAATTCCATAA
AAAAAAGCTACACTCCGTAGAACCACCCAAAGTTAGGTATATATTAAGGG
ACCGGGGGGGGGGGCACAAAAATCTTACTTTAAAAGATAATAAATAAAAA
ATTTCTCAAAAAAAGGGGCTCCAAAAACAAAAAACCTTTACCAATAAGAA
CAGATTTTTATTTTGCGCCTCCTTCCTATCTCTTCTTTTTCTCCCCCTCT
TTTTTTTACCCCTCCCCTTTAAAATCTACTTATTCCCCCCACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGAAGAGCCTGAACATGCTCTATGAACCAACCACATCTATTTTACTT
GATTCAGGGTCATTCTTAAAACAAGGCATACCATAAAGTATCCAGTGCCT
GCATTCTTACCATAATTTGTCACAAGTTCTTTGCCACATTTCTGGGCAAC
TCAGAAAGGGCCAGAACTCCTATGGTTCTTTATCCAGGTGACAAGATGGT
TATGAAGATGATGCAACAACCAAGAGAGACATTACAAAACTATTAAATAA
AACTTTATTTTTGTTTGCAATCTTAACTTCACGAAGTAGATTAGAGTATC
TCTCAGTGCTGCCTTTCCTTGATCCTCCCTCATCTACTTCTCTCCACTGC
TTCGCCCCTCTGTACCTCCAACACTCCCTTGTGGAATTGTTTTACAGCCT
TGAGTTTTTTCCATGAGTAGCCCCACTCACCCAATCTCATTCCTACCTAC
TCACCACTGTGACAATCCCAGGGGCGCCTCTTAACACCATGATTTTTTTC
ACAAGCCCAAAAAAGGAGAATTTGGCTAACGGAAAAATTATTTTGGTAAG
AAAACCTACAAAAATCTCCCAAACCGAAAAAAATATTCCTTGCCCATTTT
GCCTCTTGGTTTCTAAAGCCTTAACAAAAATTTTTATCAGGGAGAAAGAA
ATTTTTCCGTAATCTTTTGGGTCTCTCTCAGAAATAAGAACAAAATTTTC
TCTGGGTACTCCACAAATGTTTTTTCCTACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j24.g1 MSMg01no359_j24.g1 CHROMAT_FILE:
MSMg01no359_j24.g1 PHD_FILE: MSMg01no359_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:09 2005
         (404 letters)



>mm_chr5_46598489_46599292
          Length = 804

 Score =  727 bits (376), Expect = 0.0
 Identities = 397/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagagcctgaacatgctctatgaaccaaccacatctattttacttgattcagggtcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agaagagcctgaacatgctctatgaaccaaccacatctattttacttgattcagagtcat 260

                                                                       
Query: 61  tcttaaaacaaggcataccataaagtatccagtgcctgcattcttaccataatttgtcac 120
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tcttaaaacaaggcataccattaagtatccagtgcctgcattattaccataatttgtcac 320

                                                                       
Query: 121 aagttctttgccacatttctgggcaactcagaaagggccagaactcctatggttctttat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttctttgccacatttctgggcagctcagaaagggccagaactcctatggttctttat 380

                                                                       
Query: 181 ccaggtgacaagatggttatgaagatgatgcaacaaccaagagagacattacaaaactat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgggtgacaagatggttatgaagatgatgcaacaaccaagagagacattacaaaactat 440

                                                                       
Query: 241 taaataaaactttatttttgtttgcaatcttaacttcacgaagtagattagagtatctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaataaaactttatttttgtttgcaatcttaacttcacgaagtagattagagtatctct 500

                                                                       
Query: 301 cagtgctgcctttccttgatcctccctcatctacttctctccactgcttcgcccctctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 cagtgctgcctttccttgatcctccctcatctacttctctccactgcctcgcccctctgt 560

                                                       
Query: 361 acctccaacactcccttgtggaattgttttacagccttgagttt 404
           |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 acctccaacactcccttgtggaattgctttacagccttgagttt 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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