BAC Information

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BAC

Clone NameMSMg01-359K05
Chromosome5 (Build37)
Map Location 15,185,227 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359K05.T7 (MSMg01no359_k05.b1)MSMg01-359K05.TJ (MSMg01no359_k05.g1)
ACCAG469005AG469006
length757759
length of high quality
(start - end)
389 (53 - 441)417 (59 - 475)
definitionCHROMAT_FILE: MSMg01no359_k05.b1 PHD_FILE: MSMg01no359_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:10 2005CHROMAT_FILE: MSMg01no359_k05.g1 PHD_FILE: MSMg01no359_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGACTTCTC
GGATGCAGTATGGCAGTGATTACATCATCAAGTGTGTGTCCATGGGGTAA
GTGACATTATCCACACACAAAAGATCATCATTGCCTTGTATACCCCCTAG
GTGGCTATGGCTTTACTATGTAGCCCTGGCTGCCTGGAACTTACAGAGAT
CCATCTCTGGCTGTGAATTCCAAGTCTGCAGCAGGGGACAGAACACCTGA
ATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAATCAATTTTTATTCA
TAAGAAATAGAATTTTTAAAAAGTAGGTTTTAAAAGTTCAATTAATATAG
AGATAAAGGCAAAAACAAACAATGAAATACAAGAACAAGAACATATAACT
TCTAAATAACATAACAATAACTCTAAGAACAAAAATAAAAACTTAAACCA
AAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACTTTT
AGCAGCACAGCCCTCCAGCCTGCTGCTTCTCTTGGACACCATGCATCAGT
GCAGCCGTCTCAGTTCTCTGCCAAGAGAAGTTTCCCTGAATAAAATACGC
CAAAACTTCCCCGCATCATCCTTGGTTTCCCCATACAGGTTCGATCCCCC
CTTCAAAAATGGTTTTTTTTGATTCCCAATCCCCCCTTTTAAAATTTTTT
CCGCTTCCTAAAGTTGCCCCACAATAGACCTCTTTGTTTTGTACACCTCT
ATTTGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACCAGGAAAGAACAAGAGCCCAAAAGGCAGAGGAGAAGTGTT
CATGGGTGCACTAGCCAGTTACCTCTGGAAGAGCAGCTGCATGGATTCAG
GATGCACTTCATGCACACTGGGTGCCATGCTGGATGGCTGTGGAAAGTCA
TCTCTTACTAAGTCCTAATCAAAATGCTTCTAGAGAACTCCACACTGAGT
CAGGGCTTTCTGTTCCCAAGCAAACCACAGCACTGATCTCCATCTGTTTT
TCTCTGACTCTTAAAACATCCTTCCAAATTGAAAAACAAAGCACAAAATC
ATCTTAATTGCCTTGCCAAAGGGTTGGAAAGGAACACCACTTTTTGTTCA
AAAGACAACTTCAGAAACCAAAAGAGAAGCCTCAAATGGGCCAAAAGCCA
CAAATTGAAAAACAAAAGAAAAACAAGGCTGGCTGTCTACTGCCAGCAGG
AGTTCACCAGGGAGAGAAACTCTGACTCGAAAATAGTCACTTTTCCCTTT
TGTCATTGACGGCCAAAGGCCTTGTGCGCCGGCTTATGTAAATGAAACCA
CGTTTCTTTTATAAAAACCCCCCCCCCTTTCTTTTAAACCGACTTTTCCC
TTATAACCCATGGCGGTAATCTTGTCCCTATAATATTCTTTTCCCTTTTT
CTTCCTTCTCCTCCCACTCCCCCACATTTCTCCCCCCCTTTCTCCTTTTT
CCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_k05.g1 MSMg01no359_k05.g1 CHROMAT_FILE:
MSMg01no359_k05.g1 PHD_FILE: MSMg01no359_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:10 2005
         (417 letters)



>mm_chr5_15185027_15185843
          Length = 817

 Score =  760 bits (393), Expect = 0.0
 Identities = 411/417 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 558

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 498

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 438

                                                                       
Query: 181 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 378

                                                                       
Query: 241 tttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 318

                                                                       
Query: 301 tgccttgccaaagggttggaaaggaacaccactttttgttcaaaagacaacttcagaaac 360
           |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| 
Sbjct: 317 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 258

                                                                    
Query: 361 caaaagagaagcctcaaatgggccaaaagccacaaattgaaaaacaaaagaaaaaca 417
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)