BAC Information

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BAC

Clone NameMSMg01-359O08
Chromosome5 (Build37)
Map Location 39,285,873 - 39,286,225
singlet/doubletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359O08.T7 (MSMg01no359_o08.b1)MSMg01-359O08.TJ (MSMg01no359_o08.g1)
ACCAG469201AG469202
length748738
length of high quality
(start - end)
357 (33 - 389)447 (63 - 509)
definitionCHROMAT_FILE: MSMg01no359_o08.b1 PHD_FILE: MSMg01no359_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:29 2005CHROMAT_FILE: MSMg01no359_o08.g1 PHD_FILE: MSMg01no359_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCTTCA
ATAAAGAGTTGAGTAATGTATCCCTGAGTGCAAAGCCTTGCTATAATGAC
ACACAGATCAGTATGCAGATTCTACCATGGCACTTGAATATGACAGTTTG
CCATAGTTTACACAGACCATGAAAGACACAGGGATCGCTAACAGGCAGAT
TCCCTTTCGTCTTTACCAGCTCCCCACGTAATCTGAAGCTGTAAACTCCG
TTAGGAGCCAGCTCTACAAACTAAAGGGCAAATTACATGGCTTGGAGTCA
GGAGGTGTCAGCTCCCGCAGGAGCCCCCTGTTCGTTCTGCATATTAACAT
ATCACTTCTCTTCGGCTGGAGCTTGCTTATATGTAAAGTTAAAAATAACG
CCTTTATCGAAAGTCAGATTCTGATACTGAATGAGGTCATGAGTGTTAAG
CTTTGGGAAAGCATGAATCACTGTGAATGTGTAATAGGATCCCACCTTAG
CCCTCTTTGCAACCAATGTTTAACCCAGAGTCTCTGTTAAATTCAAAATG
GATGCTTTTCCTGGGATTGGGTGTGCACTCTCATATTTTTTTGTGGGCTT
TTCCTTTTCCCACCTAATGCCCTCATTTCCCTCTTATTTCCGCCTTTTCT
CTTCCCATAAAAATCCATTTTTTTCCCCGCGCACTGCCTGCTTTTTATTT
TCCGCCTTCTTCACGTTTATATTTTTCCTCTGTAACATCCACCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAATGAAAAGGAAAGTACAACATACCCAAACTTATGGGA
CACAATGAAAGCAGTGCTCTGAGGAAAATTCATAACACTAAGTGTTTTCA
TAAATAAATTGGAGAGATCTCACATTAACAACTTAACAGTACACCTGAAA
GCTCTATAACTAAAGGAAGCAAACACATCCAAGAGGAATAGATGACAGGA
AATAGTCAAACACAGGGCTGAAATTAATCAATTTGAAACAAAGAGAACAA
TAAACAGAATCAACAAATCCAGGCGCTAGTCCTTTGAGAAAATCAACAAG
ATAGACAAACCCTTTATTAAACTAACTAGAAGGCACAGATAGAGTATCCA
AATTAACAAAATCAGAAATGAAAAGGAAGACATAGCAACAGAAACTGAGA
AAATTCAAAGAATCATTGGGTCTTACTTCTACAGCCTGCTCTCCACAAAA
TTGGAAAATCTAAGTGAAATGGATGAATTTTTAGACAGATATCACATATC
ATAGTTAAATCACGATCAGGTTAACTACCTATAAAGGCTCATAACCCCTA
ATGAAATAGAAACAGTTATTAAAAAGTCCCCCAAACCCACCCCCCCCCTC
ATAAAAATCCCAGCGGCCGAATGGGTTTTAATTGAAAAAATCAACCCACT
TTTTGCTTTGCTGGCTTGCTTTGCCCGCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_o08.b1 MSMg01no359_o08.b1 CHROMAT_FILE:
MSMg01no359_o08.b1 PHD_FILE: MSMg01no359_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:29 2005
         (357 letters)



>mm_chr5_39285669_39286425
          Length = 757

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/356 (98%), Gaps = 6/356 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttc---ttcaataaagagttgagtaatgtatccctgagtgcaaagccttgcta 61
           ||||||||||     |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaattctttcaaa--caataaagagttgagtaatgtatccctgagtgcaaagccttgcta 500

                                                                       
Query: 62  taatgacacacagatcagtatgcagattctaccatggcacttgaatatgacagtttgcca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taatgacacacagatcagtatgcagattctaccatggcacttgaatatgacagtttgcca 440

                                                                       
Query: 122 tagtttacacagaccatgaaagacacagggatcgctaacaggcagattccctttcgtctt 181
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 439 tagtttacacagaccatgaaagacacagggatcgct-acaggcagattccctttcgtctt 381

                                                                       
Query: 182 taccagctccccacgtaatctgaagctgtaaactccgttaggagccagctctacaaacta 241
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 taccagctccccacgtaatctgaagctgtaaactccgttaggagccacctctacaaacta 321

                                                                       
Query: 242 aagggcaaattacatggcttggagtcaggaggtgtcagctcccgcaggagccccctgttc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagggcaaattacatggcttggagtcaggaggtgtcagctcccgcaggagccccctgttc 261

                                                                   
Query: 302 gttctgcatattaacatatcacttctcttcggctggagcttgcttatatgtaaagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttctgcatattaacatatcacttctcttcggctggagcttgcttatatgtaaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)