Query= MSMg01no360_i22.b1 MSMg01no360_i22.b1 CHROMAT_FILE:
MSMg01no360_i22.b1 PHD_FILE: MSMg01no360_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:20 2005
(473 letters)
>mm_chr5_120827806_120828678
Length = 873
Score = 783 bits (405), Expect = 0.0
Identities = 453/469 (96%), Gaps = 2/469 (0%)
Strand = Plus / Plus
Query: 6 gaattctctagcctgtacttgcatcaggggtatcctggagggctccggagaacccacagt 65
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 gaattctctagcctgaatttgcatcaggggtatcctggagggcttcggagaacccacagt 265
Query: 66 gcaggaaccatcaccagagcaccgaactcataatgcagacccaagtggttgcctgccaga 125
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 266 gcaggaaccatcaccagagcaccgaactcataacgcagacccaagcggttgcctgccaga 325
Query: 126 acacacccttggaatcccaattctactgacccctgtgtcaggcccagaatgccattaatg 185
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 acacacccttggaatcccgattctactgacccctgcgtcaggcccagaatgccattaatg 385
Query: 186 tcctcacttccctcaccatggcccagcccagctcccacaggtctgcagcaatcatcatcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcctcacttccctcaccatggcccagcccagctcccacaggtctgcagcaatcatcatcc 445
Query: 246 ctacaatgtcacctctgtctgattctgggttggcacagcaagaagaagcaaatgatggat 305
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 ctacaatgtcacctctgtctggttctgggttggaacagcaagaagaagcaaatgatggat 505
Query: 306 gtactaaagctcaactccttaaacttcctcagtcgtcactgacaatcataaaatcgaagt 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 506 gtactaaagctcaactccttaaacttcctcagtcgtcactgacaatcataaaattgaagt 565
Query: 366 attggccaagggccggcgagatggctcagttagtaaagagg-cttgcagccaaagctgac 424
|| ||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 566 atcggccaagggccagcgagatggctcagttag-aaagggggcttgcagccaaagctgac 624
Query: 425 agcctgagttcaatccctgggacccacatggtagaaggagagaaccaac 473
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 agcctgagttcaatccctgggacccacatggtagaaggagagaatcaac 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i22.g1 MSMg01no360_i22.g1 CHROMAT_FILE:
MSMg01no360_i22.g1 PHD_FILE: MSMg01no360_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:20 2005
(383 letters)
>mm_chr5_120996729_120997511
Length = 783
Score = 714 bits (369), Expect = 0.0
Identities = 381/387 (98%), Gaps = 4/387 (1%)
Strand = Plus / Minus
Query: 1 caaggccttccagtatttcatgtgtaagtgtgacccatcgcagctctgggcccctgtcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 caaggccttccagtatttcatgtgtaagtgtgacccatcgcagctctgggcccctgtcct 693
Query: 61 cctgagcccttcattcttgaaggtagagagacaaacaatccagaaaacgccaagcactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cctgagcccttcattcttgaaggtagagagacaaacaatccagaaaacgccaagcactgg 633
Query: 121 attctgtccccagtacttctc----aaaaaaaaaaaaaaaaaaaaaaaagcaaaattctg 176
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 632 attctgtccccagtacttctcaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaaaattctg 573
Query: 177 agatcgaggcacgcccagatcaccaaacttattatgtgcagaagtgatcacatgtggttg 236
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 agatcgaggcacgcccagatcaccaaacttattatgtgcagaagtgatcacgtgtggttg 513
Query: 237 cttcctggccccctgctcccttcagtccctcacttcagttctgggtctctgttgcagacc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttcctggccccctgctcccttcagtccctcacttcagttctgggtctctgttgcagacc 453
Query: 297 ccagtcctctgggaccacagtgttgatagggtccctcctgtttaaggatgcttcctcagc 356
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 452 ccagtcctctgggaccacagtgttgatagggtccctcctgtttaaggacgcttcctcagc 393
Query: 357 agatatgagtctgtcactatgcttagt 383
|||||||||||||||||||||||||||
Sbjct: 392 agatatgagtctgtcactatgcttagt 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
