Query= MSMg01no360_l18.b1 MSMg01no360_l18.b1 CHROMAT_FILE:
MSMg01no360_l18.b1 PHD_FILE: MSMg01no360_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:33 2005
(460 letters)
>mm_chr5_135642968_135643825
Length = 858
Score = 803 bits (415), Expect = 0.0
Identities = 448/459 (97%), Gaps = 5/459 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactctgtttcccaggctggccttga-ctcagaaatccgcctgcctctgcctcc 62
|||||||||||||| ||||||||||||||| ||||||||||| ||||||||| || ||
Sbjct: 203 ggaattcactctgtagaccaggctggccttgaactcagaaatccacctgcctcttccgcc 262
Query: 63 ca-agtgctgggataaatgtgttcatcacagtccctggtccagaagttctttcaaaagag 121
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 -agagtgctgggataaatgtgttcatcacagtccctggtccagaagttctttcaaaagag 321
Query: 122 aaatatttatgtcctcagtacttggtccaatgcacagaacacaggcaatgttttatccag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaatatttatgtcctcagtacttggtccaatgcacagaacacaggcaatgttttatccag 381
Query: 182 aactgaattccctgacagtgaagtggaatgctaaaagtatgagccaggtgcaaaatactc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactgaattccctgacagtgaagtggaatgctaaaagtatgagccaggtgcaaaatactc 441
Query: 242 aggaagagccgcagtgtgacctggatgttggaaaatgtagttgattcaatcagaagaaat 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 aggaagagccgcagtgtgacctggatgttggaaaa-gtagttgattcaatcagaagaaat 500
Query: 302 ttccaggtgggtagctgagaattcgaagaccagaagtcaaaatgaaggaaggtgtgataa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccaggtgggtagctgagaattcgaagaccagaagtcaaaatgaaggaaggtgtgataa 560
Query: 362 tgactccggaacacagctatttagacaatgatgacacagatctccttttaggtgaacatg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgactccggaacacagctatttagacaatgatgacacagatctccttttaggtgaacatg 620
Query: 422 cagcgcataaataattccttgaagggtcagggggtcatg 460
||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 cagcgcataaataattccttgaagggtcagggg-tcatg 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 858
Length adjustment: 10
Effective length of query: 450
Effective length of database: 848
Effective search space: 381600
Effective search space used: 381600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_l18.g1 MSMg01no360_l18.g1 CHROMAT_FILE:
MSMg01no360_l18.g1 PHD_FILE: MSMg01no360_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:34 2005
(386 letters)
>mm_chr5_135866846_135867631
Length = 786
Score = 708 bits (366), Expect = 0.0
Identities = 375/378 (99%)
Strand = Plus / Minus
Query: 1 aagtggtggtgattaccaggcaggtgtagaggctgctccagtctgagccttggagcagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aagtggtggtgattaccaggcaggtgtagaggctgctccagtctgagccttggagcagcg 519
Query: 61 tggtaacaaggctttaatactgtttacctcttaaagcacgggctgggtaagtttcagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tggtaacaaggctttaatactgtttacctcttaaagcacgggctgggtaagtttcagtcc 459
Query: 121 tcgtgcacgtaaacctgcattggcatttggctcgccctcccctcctagtgttctgaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcgtgcacgtaaacctgcattggcatttggctcgccctcccctcctagtgttctgaagca 399
Query: 181 ggttctattctacaacccgagctggccttgaactctgggcccttctacctcgaaaagtgg 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggttctattctacaacccgagctagccttgaactctgggcccttctacctcgaaaagtgg 339
Query: 241 gatccttatcctgtgtgaccagctctctgccttggatgctactctgtgaaattttattcc 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatccttagcctgtgtgaccagctctctgccttggatgctactctgtgaaattttattcc 279
Query: 301 caaaagtaaatgctcagagatttcccctccaattgtatgggtctgtttgtttggtttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caaaagtaaatgctcagagatttcccctccaattgtatgggtctgtttgtttggtttggt 219
Query: 361 ttggttgttgttgtttta 378
|| |||||||||||||||
Sbjct: 218 tttgttgttgttgtttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
