BAC Information

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BAC

Clone NameMSMg01-360O18
Chromosome5 (Build37)
Map Location 43,232,632 - 43,232,851
singlet/doubletsinglet
Overlap genenone
Upstream geneA230054D04Rik, LOC384308, LOC100040588, EG636612
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360O18.T7 (MSMg01no360_o18.b1)MSMg01-360O18.TJ (MSMg01no360_o18.g1)
ACCAG469979AG469980
length765767
length of high quality
(start - end)
435 (73 - 507)220 (75 - 294)
definitionCHROMAT_FILE: MSMg01no360_o18.b1 PHD_FILE: MSMg01no360_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:48 2005CHROMAT_FILE: MSMg01no360_o18.g1 PHD_FILE: MSMg01no360_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGTCTTACCGGAAGAATGATGATCTCCCAGAGATGTCCACAG
CCCAAACTTCAGAACCAATGTGCATATTAAGCCTTAGAGCCTCAAGGATC
TGAGGTTTGAAGTGGAGATTTCAGGTTTCTTTAACAACTCAGTTGTATCA
CATGATATTTTTCTGGAAGCTGTCCTTCTGGAAGAGAGCATGAGATGTTT
TCCTAAAAACAGACACTTGAAAGGGCAGGTGATATTTATATAAATGGAAT
CCCACAAAGATGGCTCTTGCTTTGCAAAGTCATGTGACTCTTCCCTGGTC
TTTACTTTGTAGAGAGAAATGCACCAAAACACTTCTCATGGCATTCTGGA
CGCTTCTGCTGACTCGCGCCAACTTGAGGGAGTCTTCCAGTTTCTGCTGG
ATCTTGTTACTGCAATTGATTTGTGTTTGGTGTTTGCTATTGAACTGGAC
TACTAATACACCAACTACCAAGAATGGAATCGCATCAAAGAACTACTATG
AAATGTGTCCCCCCCTTTTCCTATTAACCTTCTTTTCTCCCCTACCTCTG
GTTGGTAAGCTTTGAAAAGGAGTTTGGGTCGCTCAATAACACCTATCAAT
GGTTCTTCTTTTGATAATTTTACTCCCTCTCCGTATTTCTCCTTTCTCAT
ACAAGTGTGTCTTTTTATGGTCTCCTCTTGCTCCTTTCTTCTCTTCTTCA
CTTGTTTTCTCTATT
NCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTAGGGGAAAGCATCATCTATTCTG
ATGTCTGTTTTCTTCAGCTATCTCCCTTCTGTTGAATAATCCGTTTATCT
TTTATGTGTCCACTAAGATTATCCAAGGTTCTGTTTTGTCACAGAAATGA
TGTTTGTCTTGCTACTTCTTTCTTTTAAGATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTTATGTTTGCNAGTCCCGAA
GAGGGCATTGGATCCCTTCTTTTTATTGTGCTGCTGGAAATTGACCACTC
CTTTTTTTTAATGCATTTTTTTAATTTACATTTTCAATGTTATCCCCTTT
CTTGGTTTCGCGCCCCCCCCCCCTCTATCCTCTCATCCTTTCCCTGCTCC
CTATCCCATCTAATTCTGTTTCCTGGCCCTGATATTCCTCTATTCTGTCT
CCCAATATCTTTACTATTTTTTTTTTCCTGCTTTTTTTTGTCAATACTTT
TTTATTCCTCTGTTTTCCTCCCCTCAACCTTTTTACTCCCGTTTTTACTT
TCCAGCCACCCCCATCTCTCGTTTCTTTCCTCTTTTAATTCTCCACACTT
TTCTCTTTTCCGCCCCTCTTCCGCCTTATTTCCTATTTCGTTCTTTTTCC
CCTTTTTCCTCTTTTCTTCTTTCTTTTTCGTTCCCCTTTTCATCCTTTCT
TTTATTCCCTTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_o18.g1 MSMg01no360_o18.g1 CHROMAT_FILE:
MSMg01no360_o18.g1 PHD_FILE: MSMg01no360_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:48 2005
         (220 letters)



>mm_chr5_43232432_43233051
          Length = 620

 Score =  391 bits (202), Expect = e-113
 Identities = 214/220 (97%), Gaps = 4/220 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaggggaaagcatcatctattctgatgtctgttttcttcagctatctcccttctgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaggggaaagcatcatctattctgatgtctgttttcttcagctatctcccttctgttg 260

                                                                       
Query: 61  aataatccgtttatcttttatgtgtccactaagattatccaaggttctgttttgtcacag 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataatccatttatcttttatgtgtccactaagattatccaaggttctgttttgtcacag 320

                                                                       
Query: 121 aaatgatgtttgtcttgctacttctttcttttaagatttatttatttatttatttattta 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgatgtttgtgttgctacttctttcttttaagatttatttatttatttatttattta 380

                                                   
Query: 181 ----tttatttatttatttatttatttattttatgtttgc 216
               ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttatttatttatttatttatttatttattttatgtttgc 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)