Query= MSMg01no361_a23.b1 MSMg01no361_a23.b1 CHROMAT_FILE:
MSMg01no361_a23.b1 PHD_FILE: MSMg01no361_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:59 2005
(409 letters)
>mm_chr5_135008050_135008858
Length = 809
Score = 739 bits (382), Expect = 0.0
Identities = 400/406 (98%)
Strand = Plus / Plus
Query: 4 ggaattctgtccttgttgctgtgtgtagtatgtcgatgttggttgtgtgcatgcctagga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtccttgttgctgtgtgtagtatgtcgatgttggttgtgtgcatgcctagga 263
Query: 64 gacgggggtgggatgtatgttggggtgtacatcatagttcttggaagacaacttgctgga 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacgggggtggggtgtatgttggggtgtacatcatagttcttggaagacaacttgctgga 323
Query: 124 gtcatttctctctgtaccacatgggtccagggattgagctcactagcctaacaatgcagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcatttctctctgtaccacatgggtccagggattgagctcactagcctaacaatgcagt 383
Query: 184 ttcccaatccccctattactcagcaccctcaaggaggaagtgacctgactcaggacggtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcccaatccccctattactcagcaccctcaaggaggaagtgacctgactcaggacggtg 443
Query: 244 gccccgtggcctccctatgacaggcagtgagcatgcacccttcgccaggatgaccgtaca 303
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctccgtgacctccctatgacaggcagtgagcatgcacccttcgccaggatgaccgtaca 503
Query: 304 tttcctctgtggcctagtcctcacctcagcctcatggtccatgctcacagtggagataat 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 tttcctctgtggcctagtcctcacctcagccccatggtccatgctcacagtggagataat 563
Query: 364 ataccttggggtcccctaggccacaccctacacagctcttcctatg 409
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 ttaccttggggtcccctaggccacaccctatacagctcttcctatg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_a23.g1 MSMg01no361_a23.g1 CHROMAT_FILE:
MSMg01no361_a23.g1 PHD_FILE: MSMg01no361_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:59 2005
(413 letters)
>mm_chr5_135166254_135167066
Length = 813
Score = 513 bits (265), Expect = e-149
Identities = 402/519 (77%), Gaps = 111/519 (21%)
Strand = Plus / Minus
Query: 5 tggttgtgattcaccacgtggttgcttgggacctctggaagagcagccagtactcttaac 64
||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 617 tggttgtgattcatcacgtggttgctcgggacctctggaagagtagccagtactcttaac 558
Query: 65 tgctcagctatctctccagacccttaacaaataacttaagatttgaaatttaaaataaaa 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgctgagctatctctccagacccttaacaaataacttaagatttgaaatttaaaataaaa 498
Query: 125 ttaag-aaaaaaaaaaaccttagatgagcagggaaagaagaaagcacactaaaatacatg 183
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttaagaaaaaaaaaaaaccttagatgagcagggaaagaagaaagcacactaaaatacatg 438
Query: 184 gttatgtgctcctcaaggaagaattacagttaattaaaagacagttttagcccactttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gttatgtgctcctcaaggaagaattacagttaattaaaagacagttttagcccactttaa 378
Query: 244 ccacaagggttatacaggctagttttattaagctt------------------------- 278
|||||||||||||||||||||||||||||||||||
Sbjct: 377 ccacaagggttatacaggctagttttattaagcttgacacaggctagagtcatctgagag 318
Query: 278 ------------------------------------------------------------ 278
Sbjct: 317 gagggaaccccaattgagaaaatgcacccataaagttggcctgtaggcattttcttaatt 258
Query: 279 -----------------------gacccattgtgcgtggtcccgtccctggactggtaat 315
||||||||||||||||||| |||||||||||||||||
Sbjct: 257 agtgattgattcaggaggggagggacccattgtgcgtggtcctgtccctggactggtaat 198
Query: 316 cctgggttc-tataagaaagcagactcagtatgccagtaagcagtgttcctccatggcct 374
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cctgggttctta-aagaaagcagactcagtatgccagtaagcagtgttcctccatggcct 139
Query: 375 ctgcatcagttcctgtctccaggttcctgccctgtttga 413
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 138 ctgcatcagttcctgtttccaggttcctgccctgtttga 100
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
