BAC Information

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BAC

Clone NameMSMg01-361C01
Chromosome5 (Build37)
Map Location 60,041,507 - 60,041,832
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041396, LOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361C01.T7 (MSMg01no361_c01.b1)MSMg01-361C01.TJ (MSMg01no361_c01.g1)
ACCAG470136AG470137
length749762
length of high quality
(start - end)
548 (50 - 597)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no361_c01.b1 PHD_FILE: MSMg01no361_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:04 2005CHROMAT_FILE: MSMg01no361_c01.g1 PHD_FILE: MSMg01no361_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACTATGTTCATAGCAGCCTTATTTGTGATAGCCAAACGCT
GAAAACAACCTAGATGTCCCAGGAAAAAGAATGGATACAGAAAATGTGGT
TCATTTACACAGTGGAATAAGCTATTAAAAGAAAGAGGAGATTGCAACTT
TAGCAGGCAAATGGATGTAACTAGAAAATATCATCCTGAGTGAGGTAACT
CAGACCCAAAAGCACATGCATGTTATGTATTCACTAATATGTGGATATTA
GCCAAAAAGAAAAAGAAAAAAGAAAAAGCCCATACAGAATACACAAGATA
CAGGCCACAGACTTTAGAAGGCTCAACATTCTGACGTGCCCAAGTGAGGG
AGCCTCAGACCCACTTGGGGGAGAGAAGAAAGCAATCACAAGTGGGAAGG
GAGGGAGGAACTTGAGAGGGACAGTGGACAGGGTTGGGAGGGGAGTTGGA
CATAGAGAGGAACCTGATCTGGTATTGGGTATGGGAAAAGAACTGAAGCC
CTGAGGGCCAGCAGAAAGAATGGAAACCCATATCTGTTACCTCCCCCAAG
CCTGAAGCTGGCTGAGTCAGACTCGACTTTGCTGGTCCTAAGGAGCTTAC
CTAGGGTGTAGCCTGCCTTCCTAGATCACTCTATTATTCATCCACTGTTG
CCGTTCCCCTTCTGAAAATGACACCTGTTGGGAGGCCCCCCCAGTCTTN
TGCGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGGGAAGCAGAGGTGTGTT
GTGGGCAGGGAGTGAGAGATCAAAGCACTCAAACAATATGGAGCTGTTTT
GTTGCTCTGGTCAGGTAGTAAGTCACATATCTTACATTTGTAACCTATGT
TTCCTGGTTATCATTTCTTACACTCTTCTCTCATTTTGTGACTATCTTAC
ATTATGCTCTGCATGCAAGGATAGATCTTTGTGTCACAGCATTTAATGGC
TGGTTCTGCAATTATCAGCCTTGTAGTATTAAGAAGGAGCTGGGCTGGGG
AGTCCCACTAAATCAGAACAGACAATCCATTAATAGCTTGAAAATATACA
TTTCTCTATATAATATGAAGTATATATACATATATATACATATATACATA
TACATATATATATACATACATATGTATATGTATATATTCAAACTAGAGGA
TAAAAGTACTGTATTTATTCCCCTTGTTGCATATCTTGAAGTCTATATAA
AAAGATAAGTTTGCATAACATTTCAATGCTTCTACTATGTATAGGACATT
GTTAATATTATAAAACGGCTATTTACAGGTTGCGGAAAAGATCCTTATCC
ATCTTCATCCCGCGATAGAGGACCAACTATCCCATTTCTTCCCTTTCAAT
CCCCTTATTTCACTATTCCCCATCCCCCTTTTTATTCCATCTTCTTTTCG
CGCTTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_c01.g1 MSMg01no361_c01.g1 CHROMAT_FILE:
MSMg01no361_c01.g1 PHD_FILE: MSMg01no361_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:04 2005
         (451 letters)



>mm_chr5_60041307_60042157
          Length = 851

 Score =  576 bits (298), Expect = e-169
 Identities = 319/326 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgggaagcagaggtgtgttgtgggcagggagtgagagatcaaagcactcaaacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tatgggaagcagaggtgtgttgtgggcagggagtgagagatcaaagcactcaaacaatat 467

                                                                       
Query: 61  ggagctgttttgttgctctggtcaggtagtaagtcacatatcttacatttgtaacctatg 120
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 466 ggagctgttttgttgctctggtcaggtagtaaatcacatattttacatttgtaacctatg 407

                                                                       
Query: 121 tttcctggttatcatttcttacactcttctctcattttgtgactatcttacattatgctc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 406 ttttctggttatcatttcttacactcttctctcattttgtgactatcttacattatgttc 347

                                                                       
Query: 181 tgcatgcaaggatagatctttgtgtcacagcatttaatggctggttctgcaattatcagc 240
           ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 346 tgcatacaaggatagatctttgtgtcacagcatttaatggctggttttgcgattatcagc 287

                                                                       
Query: 241 cttgtagtattaagaaggagctgggctggggagtcccactaaatcagaacagacaatcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttgtagtattaagaaggagctgggctggggagtcccactaaatcagaacagacaatcca 227

                                     
Query: 301 ttaatagcttgaaaatatacatttct 326
           ||||||||||||||||||||||||||
Sbjct: 226 ttaatagcttgaaaatatacatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)