BAC Information

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BAC

Clone NameMSMg01-361H18
Chromosome5 (Build37)
Map Location 4,277,242 - 4,277,706
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361H18.T7 (MSMg01no361_h18.b1)MSMg01-361H18.TJ (MSMg01no361_h18.g1)
ACCAG470401AG470402
length769792
length of high quality
(start - end)
512 (48 - 559)465 (80 - 544)
definitionCHROMAT_FILE: MSMg01no361_h18.b1 PHD_FILE: MSMg01no361_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:32 2005CHROMAT_FILE: MSMg01no361_h18.g1 PHD_FILE: MSMg01no361_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCACATACCTAAACATGATAAAAGCAATCTACAGCAGGCC
AGTAGCCAACATCAAAGTAAATGGCGAGAAGGTGGAAGAATTCCCACTAA
AATCAGGGACTAGACAAGGCTGCTCACTTTCTTCCTACCTATTCAACATT
GTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGACATCAGGGG
ATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATACGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAAGAGCTTCAGTGAAGTAGCTGGATATTAAATTAACTCAAAAAAG
TCAATGGCCTTTCTCTACATAAAGGATAAACAGGCTGAGAAAGAAATTAG
GAAAACAACACCCTTCTCAATAGTCACAACTAATATAAAATATCTTGGCG
TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATG
CTCATTGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCTAAAG
CATCTACAGATTCCATGTAACCCCATTCAAAATTCAATTCATTTCCTCTT
GAATTACCAAAGGGAACTTGAAAATTCTCTGGAAATACAATAACCATGGA
TCAAAAATCTTCTCATGAG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGACCTACACAGCAGCCC
TACCACAAACACACAGGAATGAACTGAGCACATCTAAGTGAATGTGGCAC
CCATCACTTCCTGTATTTCAAGGATTGGCATAGTTTTGTGTTTTTCTTTT
GGGACCCGTAGGAGGATAGGGATAGTATTATGCTATTTCTTGCTTCAGGC
TCCTCCTAGTTGCAAGTATAGTGTTTTCCACATAATAGGCCTTCAATTAG
TATCTCTTTATAAAACTGTTTGTTTTATTTTAATTTATATGTGTATGAAT
GTTCTACCTACATGTTTGTCTGTGTGCCACTTATATGCCTAGTGCCTGCA
TAAGCCAAAAGAGGGCATTAGATCCCTTGTATTGGAGTTACAGGAGTTGC
AAGTCACAATGTGGATACTGGGAAACAAACCCAGATACTCTGCAAGAGCA
ACAAATGAATGCCCTTATCTGCAGAGTCATCTTTTCCATCTCTGTGAATG
AATATATCTTGCAAGACTATTATAAGCTACCGAACTATTTTTGTTAGCCC
TATATTTTGAAACATCCATTATGCCGGAATTTTCCTAGGGGGGTTTCACA
CCCCGATTTTCTATGGGAATGTTTAAAAGAGTTGTCCTGCCTGTATTTCC
TCCCCCCCCATTATAATTGGCAACTTTTTGAGTAAATAACTCTTTTTTCC
CTCGTTGTAACATAAAAGAGATTTCCCCTCTGTCTCTACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_h18.g1 MSMg01no361_h18.g1 CHROMAT_FILE:
MSMg01no361_h18.g1 PHD_FILE: MSMg01no361_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:33 2005
         (465 letters)



>mm_chr5_4277042_4277906
          Length = 865

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggacctacacagcagccctaccacaaacacacaggaatgaactgagcacatctaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggacctacacagcagccctaccacaaacacacaggaatgaactgagcacatctaagt 260

                                                                       
Query: 61  gaatgtggcacccatcacttcctgtatttcaaggattggcatagttttgtgtttttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatgtggcacccatcacttcctgtatttcaaggattggcatagttttgtgtttttcttt 320

                                                                       
Query: 121 tgggacccgtaggaggatagggatagtattatgctatttcttgcttcaggctcctcctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggacccgtaggaggatagggatagtattatgctatttcttgcttcaggctcctcctag 380

                                                                       
Query: 181 ttgcaagtatagtgttttccacataataggccttcaattagtatctctttataaaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcaagtatagtgttttccacataataggccttcaattagtatctctttataaaactgt 440

                                                                       
Query: 241 ttgttttattttaatttatatgtgtatgaatgttctacctacatgtttgtctgtgtgcca 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttttattttaatttatatgtgtaggaatgttctacctacatgtttgtctgtgtgcca 500

                                                                       
Query: 301 cttatatgcctagtgcctgcataagccaaaagagggcattagatcccttgtattggagtt 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 cttatatgcctagtgcctgcataagccaagagagggcattagatcccttgtattggagtt 560

                                                                       
Query: 361 acaggagttgcaagtcacaatgtggatactgggaaacaaacccagatactctgcaagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaggagttgcaagtcacaatgtggatactgggaaacaaacccagatactctgcaagagc 620

                                                        
Query: 421 aacaaatgaatgcccttatctgcagagtcatcttttccatctctg 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaaatgaatgcccttatctgcagagtcatcttttccatctctg 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)