BAC Information

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BAC

Clone NameMSMg01-361M13
Chromosome5 (Build37)
Map Location 14,441,592 - 14,441,975
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361M13.T7 (MSMg01no361_m13.b1)MSMg01-361M13.TJ (MSMg01no361_m13.g1)
ACCAG470626AG470627
length742751
length of high quality
(start - end)		385 (242 - 626)460 (80 - 539)
definitionCHROMAT_FILE: MSMg01no361_m13.b1 PHD_FILE: MSMg01no361_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:55 2005CHROMAT_FILE: MSMg01no361_m13.g1 PHD_FILE: MSMg01no361_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATATTTTGCGGCGCTATACGACTCCTATCCGGAGAGGATCCGGG
GAATTCTTTTATCTGTACTTTATAGAATTGAAGATTTTGAGATGTGTACT
ATAGCCTGAACAGCCTTAGATGTTATAGTAATGGGACAGAGCAAAGGAGA
ATATTATCAAAGGAAGGGAATATGAAACAGTGTACACAGAGATAATAGGG
GATTAAAAATGAAACTTTGTTATACTCATAGATTAATACATCACTTAACC
CCCATCAAAAGGCTTCTCCCTGCAGTAGATGTTAATTTTTAAAAAATAGT
AGTAAGTTTTCCCCTATGGTCCATGCCCTACCTTATATCAGGTTCTTGAC
CTCTTTAACAATGTCATGTCAGAATCAGGTTGATTATCTGAGGGCTAAGG
ACAGAGTTCTCAGTACAAAATAATCTTGGCATCTTAGCATCCAAAACATA
GAAATAACAAGCTTATTTAGTTCAAACTACCTGATCTGTGGTGTCTTGTT
ATGGAATCACCAGGAATATTGTATCTAATGTCTATTTTATTTGGAAATCT
CAAGATCTTGATGACATTACCAAATAAAATTTTCAAGTTAAATGGTTGAG
CAAGTATTGATTTCCCAGGAGAACACACCTACCTCAAGGCTGAATGACTG
CTATAGGAAGTGGAAATTCCTCACTTAATAAGTGTGAGATAACTATAAAG
TGGACTATATGGAAGTATAGGTCAATACTTAGTCCTGATTCT

TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTGTTTGTATTTCCATT
TTTAGATACTGGATGGTTTTTTTCAATTTCTTCACCTGTTTGTGTTTTCC
TGTATTTCTTTAAGGGATTGTTGTGTTCCTTTTTAAGGGCTTGTAACTGT
TTGTTTACCTGTGTTCTCATGTATTTCTTTAAGGGAGTTATTTCTGTCCT
TCTTAAAGTACTCTATCATCATCATAAGATGTGATTTGATATCAGAATCT
TGCTTTTCTGCTGTGTTGGGGGTATCTAAGACTTGCTGTGTTGGGGGAAC
TGGTTTCTGATGATGCCAAATAGCCTTGGCTTCTGTTGGTAATGTTCTTG
GGCATGCCTCTCACCATCTAGTTATCTCTGGTGTTAGTTGGTCTTGCTGT
CTCTGACTGGAGCTTGTACTTCCTGTGGGTCTGTAAGCCTATGTCAGCAC
TCCTGGCAAGACCAGCTCTCTTCTGGGCAGTGTTTGGTTTCAAAGGACTG
TGGAAAAGTCCCAGTTCCTGGGTTTGCAGGGAGATCATAAGGATCCTGTT
CCATCTGTTCTTCTGTTCCTGTGCCCTGTGCACTCCCGGTAGTTTCATTT
CGTTACAGTATTTGAACGAAACTATAAATCTTATCTCTGAGCTAGCATTT
TGAGCTTTCCCGGTAGAACATTTTCTTCTGTTTCTTTCCTTCTTTTTCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_m13.b1 MSMg01no361_m13.b1 CHROMAT_FILE:
MSMg01no361_m13.b1 PHD_FILE: MSMg01no361_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:55 2005
         (385 letters)



>mm_chr5_14441267_14442051
          Length = 785

 Score =  683 bits (353), Expect = 0.0
 Identities = 377/385 (97%), Gaps = 1/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttaacccccatcaaaaggcttctccctgcagtagatgttaatttttaaaaaatagta 60
           |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||
Sbjct: 709 cacttaacccccatcaaaaggcttttccctgcagtagatgctaattttt-aaaaatagta 651

                                                                       
Query: 61  gtaagttttcccctatggtccatgccctaccttatatcaggttcttgacctctttaacaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtaagttttcccttatggtccatgccctaccttatatcaggttcttgacctctttaacaa 591

                                                                       
Query: 121 tgtcatgtcagaatcaggttgattatctgagggctaaggacagagttctcagtacaaaat 180
           |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 tgtcatgtcagaatcaggatggttatctgagggctcaggacagagttctcagtacaaaat 531

                                                                       
Query: 181 aatcttggcatcttagcatccaaaacatagaaataacaagcttatttagttcaaactacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 530 aatcttggcatcttagcatccaaaacatagaaataacaagcttatttagctcaaactacc 471

                                                                       
Query: 241 tgatctgtggtgtcttgttatggaatcaccaggaatattgtatctaatgtctattttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgatctgtggtgtcttgttatggaatcaccaggaatattgtatctaatgtctattttatt 411

                                                                       
Query: 301 tggaaatctcaagatcttgatgacattaccaaataaaattttcaagttaaatggttgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tggaaatctcaagatcttgatgacattaccaaataaaattttcaagttaaatggttgagc 351

                                    
Query: 361 aagtattgatttcccaggagaacac 385
           |||||||||||||||||||||||||
Sbjct: 350 aagtattgatttcccaggagaacac 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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