NCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCACCACATGTATGCCTTGGATGTAATGTTAATGTTGAGATC
GCTGCTTGGCGACAGCAAAGTCTTATCTTTCCTCTCATAAACTGTGTATG
CCTAAGACATTTCCTCAAGTGCAGAATACGCCTTTTAACAAATATCTAAT
GGCTGTAGGAAAATCGATCCACATGTTAAATGTATCCTGTACATAAAGTT
AATCAGAATAAAGTTTCTCTCCTTGTTTGTTGCTTTTGTCTCATATCAAT
GGTGTCCTACATACTCAGGATGCACACAATAAACAGCTGCTGATTTATAT
GAATAAAATATGTCTACCACATTGCTAGTCAACTACCAATATTTCCTAAA
CTTTAAACAATTAATTTTCAGAAAATGCTTAAGTGATAAAGATCTTATAT
AAGTTCCAAAGAATAGAATCATGAGACATTATTCAGTAATGCTGTGAGAA
AACTAGGCCTGAAAGTTGAGAGAAACAAAGTGTGTGTTTTTTAGATCACT
ACTGTGTAACTTGGCCTTCCTAGGAATCTCTAGCCTTACCTACAGAAACA
AGGAAAGACATGAGAGTAAGTGGGGGGGGGGGGGAGGTCCCCATGTAGGC
TCTTGGGACTATGCCCTTCTTGATACTCGAACGGAAAAGAAATTCAAAGA
AACCCCGATGTAAAGGGTCCTTGAGCTCTTAAAAAACAAAAAGACCCACT
AAACTCCTTCTTGTTAGGGGAAGAAACTTGCTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTAAAAGAAAATGGCTAATAGAAC
ATAGGGATATAAAAACAGGTTGGATGACTCTGAGGGGTCTTAGCTACCGG
GGACCCTGCACACCCCCCACACCCCCTGTGAACCACACAGAGCTGGAGAT
CGATGAAAAAGCAAGAGGAATTTATTGTTCCAACACTCTGCAGCTATCCT
GCACCCAAAGGAGAAGTGAGCCCAGGCAGCCCGTTCAACCATTTTTTATA
CAGTTTTCAGGGGTAGAATAGCACAGCAGCAAAAAGGCACACTATGAATG
GCAGAACAGCATAACTTTTAAACTGATTGGCCCTTAGGAAATGAGGCAGG
TGGCCAGGTGTCGGTAATCAGCCTTTCCCTTGTGTGTGTGTGTGTGGNNG
GGGGGAAGGNTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNTNNNN
TTTNNNNNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTTTN

Query= MSMg01no361_n21.b1 MSMg01no361_n21.b1 CHROMAT_FILE:
MSMg01no361_n21.b1 PHD_FILE: MSMg01no361_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:02 2005
         (574 letters)



>mm_chr5_58166403_58167378
          Length = 976

 Score =  915 bits (473), Expect = 0.0
 Identities = 542/573 (94%), Gaps = 15/573 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcaccacatgtatgccttggatgtaatgttaatgttgagatcgctgcttggcg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 701 gaattcctcaccacatgtatgccttggatgtaatgttaatgttgagatcgctgcttggtg 642

                                                                       
Query: 65  acagcaaagtcttatctttcctctcataaactgtgtatgcctaagacatttcctcaagtg 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 641 acagcaaagtcttatctttcctctcataaactgtgtatgcctaagacagttcctcaagtg 582

                                                                       
Query: 125 cagaatacgccttttaacaaatatctaatggctgtaggaaaatcgatccacatgttaaat 184
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 581 cagaatacgccttttaacaaatatctaatggctataggaaaatctatccacatgttaaat 522

                                                                       
Query: 185 gtatcctgtacataaagttaatcagaataaagtttctctc---cttgtttgttgcttttg 241
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 521 gtatcctgtacataaagttaatcagaataaagtttctctccttcttgtttgttgcttttg 462

                                                                       
Query: 242 tctcatatcaatggtgtcctacatactcaggatgcacacaataaacagctgctgatttat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctcatatcaatggtgtcctacatactcaggatgcacacaataaacagctgctgatttat 402

                                                                       
Query: 302 atgaataaaatatgtctaccacattgctagtcaactaccaatatttcctaaactttaaac 361
           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 401 atgaatagaatatgtctaccatattgctagtcaactaccaatatttcctaaactttaaat 342

                                                                       
Query: 362 aattaattttcagaaaatgcttaagtgataaagatcttatataagttccaaagaatagaa 421
           |||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||
Sbjct: 341 aattaattttcagaaaatacttaagtgataaagatcttatatacgttccaaggtatagaa 282

                                                                       
Query: 422 tcatgagacattattcagtaatgctgtgagaaaactaggcctgaaagttgagagaaacaa 481
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 281 tcttgagacattattcagtaatgctgtgagaaaactaggcctgaaagttgagaggaacaa 222

                                                                       
Query: 482 agtgtgtgttttttagatcactactgtgtaacttggccttcctaggaatctctagcctta 541
           ||||||| ||||||||||           |||||| ||||||||||||||||||||||||
Sbjct: 221 agtgtgt-ttttttagat-----------aacttgaccttcctaggaatctctagcctta 174

                                            
Query: 542 cctacagaaacaaggaaagacatgagagtaagt 574
           ||||||||| |||| ||||||||||||||||||
Sbjct: 173 cctacagaatcaagaaaagacatgagagtaagt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 976
Length adjustment: 10
Effective length of query: 564
Effective length of database: 966
Effective search space:   544824
Effective search space used:   544824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)