BAC Information

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BAC

Clone NameMSMg01-362B17
Chromosome5 (Build37)
Map Location 39,280,611 - 39,281,188
singlet/doubletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362B17.T7 (MSMg01no362_b17.b1)MSMg01-362B17.TJ (MSMg01no362_b17.g1)
ACCAG470872AG470873
length747757
length of high quality
(start - end)
582 (47 - 628)616 (76 - 691)
definitionCHROMAT_FILE: MSMg01no362_b17.b1 PHD_FILE: MSMg01no362_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:21 2005CHROMAT_FILE: MSMg01no362_b17.g1 PHD_FILE: MSMg01no362_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCTGTAGCGGTCTCCTTCAAGCATTATTGTTGCTCACATGTA
TCTGGAAACACTCATTCAGTGAGGGCAGCAAATGTCCCATAGGCTGAGGG
AAGGAAAGTAAGTTTCTTACTCCAAACTAGAGATTTTGCTGTTAGAGGCA
AATAAAATGTCAAGTATTATTCACAAACCCTGCCCTTCTTCCTCAGTCTA
CCCTACACTGGGGCATTTGTTCTTAGATTATAAAGTACATATGAATCACT
AGAAGGATTTATCTTATATACAAGGGCTCTAAAGTTGAAATGTTGGTTCT
CATCTCTGTTCTGGGGTGTGCTGCAATGTGTATTTTTAACAAGTGACCTA
GTTAGTCTGAATGACAAAACAACTTACAGGGAGACTAGTCAAACCTAAAT
TTACCAGAAAATAGAGTTTAAAACACTATGGCTGGATACTTGATTTACAA
CAAGGTCCTAGGAAGGCTAGACTGAGGGGGGAAAATGGGATACTATAAAA
AGATGACACTGAGCTGTCTGTTTTGTATCTTACCTGAGAAATTGCTCCAC
TTCACAATCTTGTGGTGTCATCTTCCTAGGTCTTGATAAGACACTATGTC
CCAAAGAGTCCTCCTAGAGGATGAACGGATGACAGCTTATATCTCTCAAT
GCCAAAATTATAGAATTCAATGCTCCCCAAATTAACTTTAATTTTGG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAAGGAAAGTACAACATACC
CAAACTTATGGGACACAATGAAAGCAGTGCTCTGAGGAAAATTCATAACA
CTAAGTGTTTTCATAAATAAATTGGAGAGATCTCACATTAACAACTTAAC
AGTACACCTGAAAGCTCTATAACTAAAGGAAGCAAACACATCCAAGAGGA
ATAGATGACAGGAAATAGTCAAACACAGGGCTGAAATTAATCAATTTGAA
ACAAAGAGAACAATAAACAGAATCAACAAATCCAGGCGCTAGTCCTTTGA
GAAAATCAACAAGATAGACAAACCCTTTATTAAACTAACTAGAAGGCACA
GATAGAGTATCCAAATTAACAAAATCAGAAATGAAAAGGAAGACATAGCA
ACAGAAACTGAGAAAATTCAAAGAATCATTGGGTCTTACTTCTACAGCCT
GCTCTCCACAAAATTGGAAAATCTAAGTGAAATGGATGAATTTTTAGACA
GATATCACATATCAAAGTTAAATCAAGATCAGGTAAACTACCTAAACAGT
CTCATAACCCCTAAGGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCCC
ACCCCCCCCCAAAAAAAATCCCAGGGCCAGATGGTTTTAGTGAAGAAATC
TACCAAGCTTGCTTGCTTGCTTGCTTGCTTGCTTTCTTTCTTTCCTTCTT
TCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_b17.b1 MSMg01no362_b17.b1 CHROMAT_FILE:
MSMg01no362_b17.b1 PHD_FILE: MSMg01no362_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:21 2005
         (582 letters)



>mm_chr5_39280407_39281388
          Length = 982

 Score = 1042 bits (539), Expect = 0.0
 Identities = 569/579 (98%), Gaps = 2/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcctgtagcggtctccttcaagcattattgttgctcacatgtatctggaaaca 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gaattcctcctgaagtggtctccttcaagcattattgttgctcacatgtatctggaaaca 723

                                                                       
Query: 65  ctcattcagtgagggcagcaaatgtcccataggctgagggaaggaaagtaagtttcttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ctcattcagtgagggcagcaaatgtcccataggctgagggaaggaaagtaagtttcttac 663

                                                                       
Query: 125 tccaaactagagattttgctgttagaggcaaataaaatgtcaagtattattcacaaaccc 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 662 tccaaactagagattttgctgttagaggcaaataaaatgtcaggtattattcacaaatcc 603

                                                                       
Query: 185 tgcccttcttcctcagtctaccctacactggggcatttgttcttagattataaagtacat 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggcccttcttcctcagtctaccctacactggggcatttgttcttagattataaagtacat 543

                                                                       
Query: 245 atgaatcactagaaggatttatcttatatacaagggctctaaagttgaaatgttggttct 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 542 atgaatcactagaaggatttatcttatatacaagggctctaaagttgaaatgttggtttt 483

                                                                       
Query: 305 catctctgttctggggtgtgctgcaatgtgtatttttaacaagtgacctagttagtctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catctctgttctggggtgtgctgcaatgtgtatttttaacaagtgacctagttagtctga 423

                                                                       
Query: 365 atgacaaaacaacttacagggagactagtcaaacctaaatttaccagaaaatagagttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgacaaaacaacttacagggagactagtcaaacctaaatttaccagaaaatagagttta 363

                                                                       
Query: 425 aaacactatggctggatacttgatttacaacaaggtcctaggaaggctagactgaggggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaacactatggctggatacttgatttacaacaaggtcctaggaaggctagactgaggggg 303

                                                                       
Query: 485 gaaaatgggat-actataaaaagatgacactgagctgtctgttttgtatcttacctgaga 543
           ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 302 gaagatggg-tcactataaaaagatgacactgagctgtctgttttgtatcttacctgagt 244

                                                  
Query: 544 aattgctccacttcacaatcttgtggtgtcatcttccta 582
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aattgctccacttcacaatcttgtggtgtcatcttccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)