BAC Information

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BAC

Clone NameMSMg01-362F23
Chromosome5 (Build37)
Map Location 71,590,719 - 71,591,203
singlet/doubletsinglet
Overlap geneLOC635092
Upstream geneGabrg1, Gabra2
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F23.T7 (MSMg01no362_f23.b1)MSMg01-362F23.TJ (MSMg01no362_f23.g1)
ACCAG471073AG471074
length759775
length of high quality
(start - end)		486 (67 - 552)494 (79 - 572)
definitionCHROMAT_FILE: MSMg01no362_f23.b1 PHD_FILE: MSMg01no362_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:43 2005CHROMAT_FILE: MSMg01no362_f23.g1 PHD_FILE: MSMg01no362_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATAGCCTAAGTTGAAGTACATTTNTGAGACAGAAATTGAAAA
AAGTGGAGAGTTCTATGTGGTGGATAATAGAAGATCTATTTTCTGATAAT
TGGAAGGTCTCCAGTATACAAATCAAACACAAAATATTCATAGAATATTA
ACTGGACTATAGTATACCAGAAATATTAGGGAATATTGTGGATTTGTAGA
AGTGGATGGAATAAAATGTTTATTAGGTTAAATGAATTTTGATATAATAG
ATGTGCATTGAATAGTTTTCTTTTGTGATTAAAGAAGAAAAAAGAATCAA
ATAAATTTCTATTTATTTTCTTTAACTATGTGAACAAGGTTTATATGTTG
CAACAATCTCAAAAGCTCTAGGCATCATTGTGAACTGGTAGATTAAGCTT
GGATTTTGTGAAAACAGGTAATCATTCTACAGGAAGAGGGTAGATATGGT
AAAGCAAGGATTTAGATTCAGATATGGTTATTTCTAAAGTACATGTTCCG
TCACCATAGAACATTAAAATATTATCTAGATATTTAGAATGTTTCTGAAT
TTGCTATCACTGTGTTACTGCTTAGATACACGCTTACCTATCTATGTATA
AACTTCTGTGAAAGTTTTGTAACTGCTCCCTTGAAATTTTCCCCCGAATA
TTTGTGTTTGGCCACTCTTAAGCATCAAGGGTCCCCGTACTTTTGACTCT
TTTATGACC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTAGTTCTGTACCCAAT
TTTTAATGGGATTATTTGATTTTTCCGGAGCCCAGCTTCTTCCATTATTT
GTATATATTGGATACAAGTCCCATATCAGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTCGCCTTTTTGTCTTATTGATAGTGCCTTTTGAC
TTATGAAGCTTTGCAATTTTATGAGGTCCCATTTGTGGATTCTCGATCTT
ACAGCACTAGCCATTGCTCTTCTGTTCAGGAATTTTCCCCCTGTGCCCAT
ATCATCTGCAAATAGTGATATTTTGACTTCTTCCTTTCCAATATGTATCC
CCTTCATCTCCTTTTGTTGTCTAATTGCTCTGGGTATGGCTTCAAGTACT
ATACTGAATAGATAAAGAGAAAGTGGGCAGCCTTGCCTAGTCCCTGATTT
TAGTGGAAATGCTTCATGTTTCTCTGCATTCAGTTTGATGTTGGCTGCTG
GTTTGCTGCATAATGCTTTCATTATGTTTAGGTACAGGCCTTTGATTTCT
GATCTTTCCNAGACTTTTATCACAAATGGGTGTTGGATTTTGTCGAATGC
TTTCTCACCATCTAAAGGAGAGATCATGGGGGTTTTTGGCCTTTGAGATT
GGTTAAATAAGGGATTAAGTTGGAGGGGTTTTTGGATTTAAACACCTCGG
GGCCTCCTGGGGAAGAAAACAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f23.b1 MSMg01no362_f23.b1 CHROMAT_FILE:
MSMg01no362_f23.b1 PHD_FILE: MSMg01no362_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:43 2005
         (486 letters)



>mm_chr5_71590519_71591403
          Length = 885

 Score =  909 bits (470), Expect = 0.0
 Identities = 482/486 (99%), Gaps = 1/486 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgaagtacatttntgagacagaaattgaaaaaagtggagagttctatgtggtggata 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgaagtacattt-tgagacagaaattgaaaaaagtggagagttctatgtggtggata 259

                                                                       
Query: 61  atagaagatctattttctgataattggaaggtctccagtatacaaatcaaacacaaaata 120
           ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 atagaagatctgttttctgataattggaaggtttccagtatacaaatcaaacacaaaata 319

                                                                       
Query: 121 ttcatagaatattaactggactatagtataccagaaatattagggaatattgtggatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcatagaatattaactggactatagtataccagaaatattagggaatattgtggatttg 379

                                                                       
Query: 181 tagaagtggatggaataaaatgtttattaggttaaatgaattttgatataatagatgtgc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 tagaagtggatggaataaaatgtttattaggttaaatggattttgatataatagatgtgc 439

                                                                       
Query: 241 attgaatagttttcttttgtgattaaagaagaaaaaagaatcaaataaatttctatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attgaatagttttcttttgtgattaaagaagaaaaaagaatcaaataaatttctatttat 499

                                                                       
Query: 301 tttctttaactatgtgaacaaggtttatatgttgcaacaatctcaaaagctctaggcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttctttaactatgtgaacaaggtttatatgttgcaacaatctcaaaagctctaggcatc 559

                                                                       
Query: 361 attgtgaactggtagattaagcttggattttgtgaaaacaggtaatcattctacaggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attgtgaactggtagattaagcttggattttgtgaaaacaggtaatcattctacaggaag 619

                                                                       
Query: 421 agggtagatatggtaaagcaaggatttagattcagatatggttatttctaaagtacatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agggtagatatggtaaagcaaggatttagattcagatatggttatttctaaagtacatgt 679

                 
Query: 481 tccgtc 486
           ||||||
Sbjct: 680 tccgtc 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space:   416500
Effective search space used:   416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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