Query= MSMg01no362_j04.b1 MSMg01no362_j04.b1 CHROMAT_FILE:
MSMg01no362_j04.b1 PHD_FILE: MSMg01no362_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:59 2005
(334 letters)
>mm_chr5_20882569_20883304
Length = 736
Score = 629 bits (325), Expect = 0.0
Identities = 331/333 (99%), Gaps = 2/333 (0%)
Strand = Plus / Plus
Query: 4 ggaattccttacttgtggatgtcaagggtcacattaaaaggctctgggg-cagtttcact 62
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 ggaattccttacttgtggatgtcaagggtcacattaaaaggctctgggggcagtttcact 263
Query: 63 cactttattcttgtgaaaaggggtcactcagagagaaacaacc-agccgcacacttaaac 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 cactttattcttgtgaaaaggggtcactcagagagaaacaacccagccgcacacttaaac 323
Query: 122 gtgctcttgggtggaatctgaagtgccgcatgcagtcagtcacgtggagtaactgactgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgctcttgggtggaatctgaagtgccgcatgcagtcagtcacgtggagtaactgactgt 383
Query: 182 acaacatgcactgtctaagcaataactttgatctttaagttttggtgtagcttctaatat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaacatgcactgtctaagcaataactttgatctttaagttttggtgtagcttctaatat 443
Query: 242 actaaccaagcttttgaaatatatgcacaaagattccaccttagttatttttaaaacata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actaaccaagcttttgaaatatatgcacaaagattccaccttagttatttttaaaacata 503
Query: 302 actagggaggatatttattgtcttgactactta 334
|||||||||||||||||||||||||||||||||
Sbjct: 504 actagggaggatatttattgtcttgactactta 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 736
Length adjustment: 9
Effective length of query: 325
Effective length of database: 727
Effective search space: 236275
Effective search space used: 236275
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_j04.g1 MSMg01no362_j04.g1 CHROMAT_FILE:
MSMg01no362_j04.g1 PHD_FILE: MSMg01no362_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:00 2005
(340 letters)
>mm_chr5_21067595_21068334
Length = 740
Score = 574 bits (297), Expect = e-168
Identities = 300/301 (99%)
Strand = Plus / Minus
Query: 1 cttactgccacagctttccctgaacaaacgaactagctctcgtggttgcccagcccctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttactgccacagctttccctgaacaaacgaactagctctcgtggttgcccagcccctgc 242
Query: 61 tgttttctcttcatgtaaatatttattgacttcggaatcaagtgtgcagatgacacttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttttctcttcatgtaaatatttattgacttcggaatcaagtgtgcagatgacacttgt 182
Query: 121 gggtgggcacccatggaagccaggggtgccgaattcctctggagtcagggttgtaggtgg 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 gggtgggcacccatggaagccaggggtgccggattcctctggagtcagggttgtaggtgg 122
Query: 181 ctgtgaaccacccgattgtcctggcaatggaatgctggccctctgggaagcagtgcatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgtgaaccacccgattgtcctggcaatggaatgctggccctctgggaagcagtgcatgc 62
Query: 241 tcttaacccatctctcccacacagactctccctggttttgaaacagggtgtcacgaagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttaacccatctctcccacacagactctccctggttttgaaacagggtgtcacgaagcc 2
Query: 301 c 301
|
Sbjct: 1 c 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
