NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAACCAGTACATTAAATTATGGAGCTGAAATATGACTGGGAA
AACAACCATAAGAGAAATAAAACTGAAGTTTTTTGTTTCTGTTGCTTCTG
ATACTTAAGAGTATAGTTAAGTATAATTGTAGGCTGTCTAGGCTAAAATT
TCAGTTAAAATTATATGTGGAAGCCAGAAAGCCGACTTGGCTGCATTTGA
TGTTTATTCTCCTACCATTAATAATAAGAAGAAATTGAGTCCTATCATTT
AGACAAAAAGGATTATATAGCTCCTTGTTCTTCTGTGTCTTTAATAATAA
CATAGAAATAATGACATGCCAAGGTATGCGTACTCATGTCTTCCTTTCCA
GTCTGAACCATTCTACTGAGGAGCTAGCTCTGTCAATTTAAACATTCATT
TTTATTATGATTTTTAGCTTCTTTGTGTATAAAATGAGATGTTTATAGTA
TATCCTTTCCTAGGTATATATTAAGTACCTGATGTATAGTGTCTCCAACT
AGAAAATACTTTTGAGGATCTTGGTCCAATAAGATCATTAGTATTTTAAA
AGTTAGTTTATGTTACGAGCAATATAGCAAATGCTAGTTAGAAAGTTTTC
TATTATGATTACTAAAAATAGGAAAATGCCTCATTTTTAAGCACTTTTCC
TTTTCTGCGAAGTATTTTTTTTATACAAGAAAATTCTGGCTTCTTAAT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCGTTCTTTACCCCATTTT
TCAATTTTTTAATTTGGCTTGTTGGTGTCTAACTTCTTGAGTTATTTGTA
AATTTTGGATATTAGTTCTCTGCCAGATGCTTTGGTGAAGATCCTTTCCC
AGTCTGTATGGTGTGAATTTTTCCTATTGACAGTGCCCTTGCCTTACAGA
AACATTGCCCTTTCATCAGGACATTTACCAATTAGTAATCTTAGAGCCTG
TGTCATTGGTGTTTTGTTCAGGAAATTTTCTCCTGTACCAATCCATTCAA
AGGTTTTTTTCACTTTCTCTTCTATGATATTTAGTATATCTGGTTCTATG
TTGAAGTCCTTGATCCACGTGGGCCTTTCTTTTGTGCAGGGTAATAAGTG
TAGATCTATTTTCATTATTCTATAAGTATACATCCAGTTAGAACAGCACC
ATTTGTTTAAGATACTTTCTTTTTTCCATTGTATAGTTTTGATTTCTTTA
TCANAAATCAAGTGTCCATAGGTATGTGGATTTATTTCTGGGTGTTCAAT
TCAATTTCATTGATAAAAATGTCTGTTTCTGTACCCGTATTCTGTACCGT
ACTTGGATTTATATATGTGCATTCTGGTTTTCAACCTAACATTAATGTAT
CTTGCAAATGCATTTTTCCTTTTCTTAAGTTGTTATTGGCCCCTCTGCCT
CAAA

Query= MSMg01no362_n01.b1 MSMg01no362_n01.b1 CHROMAT_FILE:
MSMg01no362_n01.b1 PHD_FILE: MSMg01no362_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:19 2005
         (529 letters)



>mm_chr5_61141288_61142216
          Length = 929

 Score =  932 bits (482), Expect = 0.0
 Identities = 515/526 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaaccagtacattaaattatggagctgaaatatgactgggaaaacaaccata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 729 ggaattcaaaaccagtacattaaattatggagctgaaatatgactgggaaaacaatcata 670

                                                                       
Query: 64  agagaaataaaactgaagttttttgtttctgttgcttctgatacttaagagtatagttaa 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agagaaataaaactgaagtttgttgtttctgttgcttctgatacttaagagtatagttaa 610

                                                                       
Query: 124 gtataattgtaggctgtctaggctaaaatttcagttaaaattatatgtggaagccagaaa 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtataattgtagtctgtctaggctaaaatttcagttaaaattatatgtggaagccagaaa 550

                                                                       
Query: 184 gccgacttggctgcatttgatgtttattctcctaccattaataataagaagaaattgagt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 accgacttggctgcatttgatgtttattctcctaccattaataataagaagaaattgagt 490

                                                                       
Query: 244 cctatcatttagacaaaaaggattatatagctccttgttcttctgtgtctttaataataa 303
           |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 489 cctatcatttagacaaaaaggattgtatagctccttattcttctgtgtctttaataataa 430

                                                                       
Query: 304 catagaaataatgacatgccaaggtatgcgtactcatgtcttcctttccagtctgaacca 363
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 429 catagaaataatgacatgccaaggtatgcttactcatgtcttcgtttccagtctgaacca 370

                                                                       
Query: 364 ttctactgaggagctagctctgtcaatttaaacattcatttttattatgatttttagctt 423
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 369 ttctactgaggagctagctctgtcaatttaaacattcattttcattatgatttttagctt 310

                                                                       
Query: 424 ctttgtgtataaaatgagatgtttatagtatatcctttcctaggtatatattaagtacct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctttgtgtataaaatgagatgtttatagtatatcctttcctaggtatatattaagtacct 250

                                                         
Query: 484 gatgtatagtgtctccaactagaaaatacttttgaggatcttggtc 529
           |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 249 gatgtatactgtctccaactagaaaatacttttgagaatcttggtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)