NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTGTCATTACTTTTTTTTTTTTTGCATTAGAGAATG
AACATTGCCACTTTAATTAAATGTCATAGGTCTATCCCTAGAATGCCCTT
CCTCAGCTATCCTTTTACATCGAAGAATAAAATTCACTAAGCCAAAGCAA
TTCTCAAAAAGAAGGAACGCAGCTGCCACTGGCATTTGAAAACTGTTTCT
ACAGGTTCCGTGTTCTGGGAGGCCTTTTCGTACTTCACTTCTCAGATGTG
AGCAGTGGAGAGACGGCTACGGATGCAGTTCACATCACGTGCCCAATACA
GAGAGCACATTTTGATAAGCAAAATTGAAGTAGCCATTATTTCCTGAGAC
AAATTTAATTTAAATGACGAACACTGTTTTCTGAAGTTTTATTATTCGCT
CTGTACTCACCGACACCAGACACTTGGACAATTCAATTGTCTGTAAAACA
ACATAAGGTTTGGGGAAAGTGGTGCACGAGAACACGCAATGTGGAGTCAG
CAGAAGGCAACATTTGGGACTTATCGAAGAGTGTTACATACTCCTAAACG
AGAAAGGAAGAANAGAATGAAAAAGGTTTAAATCAGAAAGCCCAAATAAT
CTGAATAGGCCACTATGCTGGAAGACAGTAAGCCAGCCAAACAATAGACC
AAGACTCTTTCTTCTGTGACATAGCCAGCAAAGCCGGTGATCTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGATGCACTTGGACTTTGTACAAGG
ATATAAGAATGGATCAATTCACATTCTTCTACATGATAACCTCCAGGTGT
GCCAGCACCATTTGTTGAAAATAATGTCGTTTTTCCACTGGATTGTTTTA
GGTCCTTTGTAAAAGATCAAGTGACCATGGTATGTGGATTCATTTCTGGG
TCTTCAATTCTATTCCATTGATCTACCTGTCTGTTGCTGTACCAGTACCA
TGCAGTTTTTAATCACAATTGCTCTGTAGTACAGCTTTAGATCAGGCATG
GTGATTCCACCAGAGGTTCTTTTATTGTTGAGAATAATTTTTGCTACCCT
AGGTTTTTTGTTATTCCAGGTGAATTTGCAAATTGCCCTTTCTAAATCTG
TGAAGAATTGAGTTGGAATTTTGTTGGGGATTGCATTAAATCTGTAGATT
CCTTTCAGCAAGGTAGCTATTTTTACTATATTGATCCTGCCAATCCATGA
GCATGGGAGATCATTCCATCTTCTGAGATCTTCAATTTCTTTCTTCAGAG
ACTTGAAGTTCTTAACATACAGATCTTTCACTTCCTTAATTGGAGTCACA
CCCTTTACTTTTTATTATTTGTGACCATTGTGCAACGCGGTGGTTCCCCA
AATTTCTTTCCCACCCCGTTTATACTTTGTGGAGAAAAAGGCTATAAACT
TT

Query= MSMg01no362_n15.b1 MSMg01no362_n15.b1 CHROMAT_FILE:
MSMg01no362_n15.b1 PHD_FILE: MSMg01no362_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:22 2005
         (564 letters)



>mm_chr5_18709947_18710914
          Length = 968

 Score = 1056 bits (546), Expect = 0.0
 Identities = 558/564 (98%), Gaps = 4/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttcagtgtcattacttttttt----ttttttgcattagagaatgaacatt 60
           |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 768 gaattctttgttcagtgtcattacttttttttttattttttgcattagagaatgaacatt 709

                                                                       
Query: 61  gccactttaattaaatgtcataggtctatccctagaatgcccttcctcagctatcctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gccactttaattaaatgtcataggtctatccctagaatgcccttcctcagctatcctttt 649

                                                                       
Query: 121 acatcgaagaataaaattcactaagccaaagcaattctcaaaaagaaggaacgcagctgc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 648 acatcgaagaataaaattcactaagtcaaagcaattctcaaaaagaaggaacgcagctgc 589

                                                                       
Query: 181 cactggcatttgaaaactgtttctacaggttccgtgttctgggaggccttttcgtacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cactggcatttgaaaactgtttctacaggttccgtgttctgggaggccttttcgtacttc 529

                                                                       
Query: 241 acttctcagatgtgagcagtggagagacggctacggatgcagttcacatcacgtgcccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acttctcagatgtgagcagtggagagacggctacggatgcagttcacatcacgtgcccaa 469

                                                                       
Query: 301 tacagagagcacattttgataagcaaaattgaagtagccattatttcctgagacaaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 468 tacagagagcacattttgataagcaaaattgaagtagccattatttcctaagacaaattt 409

                                                                       
Query: 361 aatttaaatgacgaacactgttttctgaagttttattattcgctctgtactcaccgacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aatttaaatgacgaacactgttttctgaagttttattattcgctctgtactcaccgacac 349

                                                                       
Query: 421 cagacacttggacaattcaattgtctgtaaaacaacataaggtttggggaaagtggtgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cagacacttggacaattcaattgtctgtaaaacaacataaggtttggggaaagtggtgca 289

                                                                       
Query: 481 cgagaacacgcaatgtggagtcagcagaaggcaacatttgggacttatcgaagagtgtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cgagaacacgcaatgtggagtcagcagaaggcaacatttgggacttatcgaagagtgtta 229

                                   
Query: 541 catactcctaaacgagaaaggaag 564
           ||||||||||||||||||||||||
Sbjct: 228 catactcctaaacgagaaaggaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 968
Length adjustment: 10
Effective length of query: 554
Effective length of database: 958
Effective search space:   530732
Effective search space used:   530732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)