BAC Information

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BAC

Clone NameMSMg01-362O08
Chromosome5 (Build37)
Map Location 7,592,325 - 7,592,775
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362O08.T7 (MSMg01no362_o08.b1)MSMg01-362O08.TJ (MSMg01no362_o08.g1)
ACCAG471471AG471472
length1,345768
length of high quality
(start - end)
---450 (73 - 522)
definitionCHROMAT_FILE: MSMg01no362_o08.b1 PHD_FILE: MSMg01no362_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:26 2005CHROMAT_FILE: MSMg01no362_o08.g1 PHD_FILE: MSMg01no362_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTGCGGGTGTCGTGCGCGGTGGGGTGGGTTTATATGTATTTAACGGCGC
CGGCACCGGGTATTCTTTTTTTGATATTGTTATTAATCCCCTCTCCGTCA
TTGTGCTGTTCTCAGTATCCCATGGCTCTCGCCGTGCTCGCGCACTCCCT
GCCCGCGTGTTTGTATTTAGTCTGCTCTCTGCCGTCGCGCGGCGCGCGAG
ACAACTGGGACGCGGGCTGGCTTGGCGCGCNGTGCGTGGCGCTCTTTCGC
GCCCGCGGCGCCGCGTCGGGATCCGCTGGCCGTGTGGGGGGGAGCTNTTG
TTACGAGGTAGGTGATGTGTATCGCAGCTCTCGTTGTNTCACCGTCTCAG
TTAATCGGCGCGTACGTCCGCGCCGTATTCACCGTGTCGTATCTCAGAGG
ACGCCGGGCGAGGTGGCGAGCGTATATCGTCGTGGCGTCGCCCCTTGATC
GTGGGTGCTGTGGGCGCGGCGCGCGTCGGGCGGGGAGCGGGTTAGTGTGG
GTGGTGTTGTGTGCGGAGGTCGGCGCGTGATGGGTGCCGTCGAGGCGGCG
TGATCCGGCGGTCGGCTGGTCGCGGCTGGGTGGGGGTGTGCGGGCGGCGC
GCGCCGCGGCGCTCCCGCTTCGACATGTAATCACCGCCGCCGCGCGGTGT
GGTGTCTCGGCCGGTCGGCTGTATAATCCTGTCACCATATAACAGCACGC
TGTCTGTGTGCCTCGGGAGTATTATACTCCCTCGCGAGCGCGGCTGAGCG
TCGCGTGACGTCGGCGTCGGTGGGCTGTTTGAGTGTGACATGCGTCACAT
TAATAGAGTATGACGGTGCTGACTCAGTACTGTTGGCTGCCAGTCGGTCT
GCTGTAATGTCCTGCTCACCTCGGCGCCGACACNAGACTGACTACGCCAT
AGCGCGGCGGCGCGCTGGAAAGATGACGCCGTTGTGTCATCTCTTATCAC
GCGCGCCCCACCGCACGCCGCCGTGTTTGTTATGACGCGCGTGTGCGGCC
CACCCCGTCTCTGTTGTCTCCGCGCCGCTCATTGACCTCGTCCGCGCGAC
GTGTCTTCGGTAGTGTGTGCCAGTGGATTCAACTTTTCTCTCTCGCTTGC
GCGCCCTATTTATATCGCGTCGCCGCGCTGATACACTCCNTCTATTCGTC
TTCTCGGCCNCAGCTCTATATCTCTTCGTATTCATTCGNTTGTAGTGAGA
GGCGCGCTGTTCGGGTCGAGGTACCGCAACGACGCCGTCTTCATCGCTTC
GTCTCCTGCTCCTGCTGCCTATTCGTCATTGTTCCTATCCGCCTACGACC
TGATTCTCTACTACGTGTATGCGCGTATCCTCGCTATCTGATATT
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAACTGATCTTCAGATCCTATCAAAAG
TGACATTTGAAATTGAGAAACGTGCTCTGTGTATAAAATATATGCCCAAC
TGAGCTTGAAACAGTGATGTATTGTAGCGGCAGTTATAGTAGCTATTATA
TTACAAAGTGATATGTCCCTTCCCCCAGGCAGTTGCAAAGCTCAAATCTT
ATTTTTCATTTATTTACGTTCAATTAAAGGATACAGAAATGGAATGAGAT
TGATGAAAATTTCTCTGGAGATTTTATAAAGAAAATCCTAAGTGATCATT
TAGGGCTTTTTTTCTAGCACTGGTATTTTCATGAGACTTCCCTTCTTTTG
AGTGTTGTAAGTGGGTCCCTTCTCTCATTTTCTCACATGCTCCTCACCAG
CACATCATCACTCCATAGAATCTAATTTAAGGTAAGAGATGAAATCTGAA
GAATTTAGGTGAAATTGTGTTGTACAGAAGGAAGCAGTGGAAAAGTATCA
ATCATTAGTGAAGTTATAATTCCGTTATTCCTGCCTTGAGGCAAAATTCC
CAGGAGCCTTTATTACTGCCTATGTGTGAAGACTGGTTACCCCCTGACAA
TCCTGGAGTACCACCATATATGCGGCCTTTACATCTCACAATCCTAATCT
GCATCCTTTGACCACCCTTGCACTACTACTGGTTACTTCCGTTATACCTA
TATTCCCTTCTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_o08.g1 MSMg01no362_o08.g1 CHROMAT_FILE:
MSMg01no362_o08.g1 PHD_FILE: MSMg01no362_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:26 2005
         (450 letters)



>mm_chr5_7592125_7592975
          Length = 851

 Score =  833 bits (431), Expect = 0.0
 Identities = 446/451 (98%), Gaps = 1/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaactgatcttcagatcctatcaaaagtgacatttgaaattgagaaacgtgctctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 651 agaactgatcttcagatcctatcaaaagtgacatttgaaattgagaaacatgctctgtgt 592

                                                                       
Query: 61  ataaaatatatgcccaactgagcttgaaacagtgatgtattgtagcggcagttatagtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ataaaatatatgcccaactgagcttgaaacagtgatgtattgtagcggcagttatagtag 532

                                                                       
Query: 121 ctattatattacaaagtgatatgtcccttcccccaggcagttgcaaagctcaaatcttat 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctattgtattacaaagtgatatgtcccttcccccaggcagttgcaaagctcaaatcttat 472

                                                                       
Query: 181 ttttcatttatttacgttcaattaaaggatacagaaatggaatgagattgatgaaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttttcatttatttacgttcaattaaaggatacagaaatggaatgagattgatgaaaattt 412

                                                                       
Query: 241 ctctggagattttataaagaaaatcctaagtgatcatttagggcttttttt-ctagcact 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 411 ctctggagattttataaagaaaatcctacgtgatcatttagggcttttttttctagcact 352

                                                                       
Query: 300 ggtattttcatgagacttcccttcttttgagtgttgtaagtgggtcccttctctcatttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggtattttcatgagacttcccttcttttgagtgttgtaagtgggtcccttctctcatttt 292

                                                                       
Query: 360 ctcacatgctcctcaccagcacatcatcactccatagaatctaatttaaggtaagagatg 419
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctgacatgctcctcaccagcacatcatcactccatagaatctaatttaaggtaagagatg 232

                                          
Query: 420 aaatctgaagaatttaggtgaaattgtgttg 450
           |||||||||||||||||||||||||||||||
Sbjct: 231 aaatctgaagaatttaggtgaaattgtgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space:   370040
Effective search space used:   370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)