BAC Information

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BAC

Clone NameMSMg01-362P04
Chromosome5 (Build37)
Map Location 138,309,955 - 138,310,100
singlet/doubletsinglet
Overlap genePilrb2
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1
Downstream geneLOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P04.T7 (MSMg01no362_p04.b1)MSMg01-362P04.TJ (MSMg01no362_p04.g1)
ACCAG471510AG471511
length821820
length of high quality
(start - end)		301 (44 - 344)145 (75 - 219)
definitionCHROMAT_FILE: MSMg01no362_p04.b1 PHD_FILE: MSMg01no362_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005CHROMAT_FILE: MSMg01no362_p04.g1 PHD_FILE: MSMg01no362_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTACTGAATTCCAGGTAATCAGCTTACACGGTCTTTCTAGGGCATTG
GAACACTGGCAAAGACTAACTGTATCAGGATACAATTTTGAAAGGCACTA
TAGTAAGATAACACTAAAGGAGAGTACGTGGATCCTCCTCAACAGCCTTG
GATGATAGGCAGGGAACAGAGAGGAGGGGGTGATGACTGGCTCTGTAGCA
CAAAGCCATTTGGCTTGTTAGGGTGGGAGGCTGTGAAGGGCTTGCCCTTA
TCATGGTATGTTCTCCAACCTCTCCCCCCCCCCTTTGAATTATACTTAAT
AAGGTCAAACTTATCTGATGTGATCAAATGATCTTCTCATCCTTGTATGA
GCGTTTTTTATCCCTGCTTGTTGGAGCTTTGACTCCACTTCCTCCCTTGA
TTGCTGTCTTGATTTCCTCCCTTGTCTCTTGTTTATCTTTCGTTTTTTCT
CCCTCTTCCCCCTCTTTTCTCCCCCCTTCTTTTCCTTTTTATCCTCCTCC
TTTGTTTTCCTTCCTTTTCCCCTCCTCCTCTCTTCTCTTTCACGCCCTCT
TCCTTCTTTTTTTTTTCTTCCCATCTGCTTTTTTCTCCCCCTATCTCCTT
TATCTCTTTTTTCTCTTCTATTATTTCTTTCTTACCACCCCCTCTCCCTC
CTCTTCTCTCTTGTCTTTCTTCCTTTCTCCTTCCCTACTTTTTTTTTACG
CTCTTCGTTCCTCTTCTCTACTCTTATCTTTCTTTTTTCCTTCCGCTCTA
TATTTCCGACCCTCCACCCTG

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGGTGACAATGAAGGGGCTCCTCG
TGGTGGTGTTGAGTGCTGGGGAGAGATGAGAACTGAGCAGACATTCCCTG
GATGAGGGAGGGATGGGTGAGTGTTAATCCTGTCTCCTCTATGTGATACG
GGATGTGGAACATCTGTCATATGTTCTCACAGAGAAGGGAACAGATGCTT
ATAGATGAGTCTCTAGAATAGCATACTCTCATGCACAGTCTCTAACTATC
CTGTCGTGTGTCCACATATTTTTCTTTGGTCCTATGTAACTAAGGCAGAA
TACTAACCATTGACCTTTTTTCATTTAAATGTCCGTAACATACATTCGGT
TGTCTATAACAGCTTGCTGCTTGTCCCTCAAACCTTCATATTTGCTCCCT
AGTATTTATAACATTATTCTGCCGCAATGTCCCTGCTCTTTTCCCCCTTC
TCCTTCCATATTTACCTCCCCTTCTCTCTTCTTTCATTTCCCCTTTTCTC
CCTGGTCCCATTTTTTTTTCTCTCTACCCTTTCCCCTTCCTTTTTCTCTT
CTGCCCTCCCCCTCCCCTTTCCCATTTCTTCCCTCTCTCTCCCCCCTCTT
CCCCTCCCTTCTTTTTCCTCTCCTCCTATCTTCTCTTTCCTCCCCCTCCC
CTCTCTGCCCTCTTCTCCCCCTTCTCCCTTTTCTTCTTTACCGCGCTTTC
TTTTTTTCTTATTTCCCCCTTCTCTCCCCGCCTCTCCCTCTTTTCTCCCC
CCCTCTTCCCTCTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p04.g1 MSMg01no362_p04.g1 CHROMAT_FILE:
MSMg01no362_p04.g1 PHD_FILE: MSMg01no362_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:30 2005
         (145 letters)



>mm_chr5_138309755_138310300
          Length = 546

 Score =  244 bits (126), Expect = 2e-69
 Identities = 141/146 (96%), Gaps = 1/146 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggtgacaatgaaggggctcctcgtggtggtgttgagtgctggggagagatgagaact 60
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggtgacgatgaaggggctcctcatggtggtgttgagtgctggggagagatgagaact 260

                                                                       
Query: 61  gagcagacattccctggatgagggagggatgggtgagtgtta-atcctgtctcctctatg 119
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gagcagacattccctggatgagtgagggatgggtgagtgttacatcctgtctcctctatg 320

                                     
Query: 120 tgatacgggatgtggaacatctgtca 145
           ||||| ||||||||||||||||||||
Sbjct: 321 tgatatgggatgtggaacatctgtca 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 546
Length adjustment: 8
Effective length of query: 137
Effective length of database: 538
Effective search space:    73706
Effective search space used:    73706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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