BAC Information

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BAC

Clone NameMSMg01-363A18
Chromosome5 (Build37)
Map Location 150,733,161 - 150,923,532
singlet/doubletdoublet
Overlap geneLOC100040089, Rxfp2
Upstream geneKatnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
Downstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A18.T7 (MSMg01no363_a18.b1)MSMg01-363A18.TJ (MSMg01no363_a18.g1)
ACCAG471585AG471586
length752810
length of high quality
(start - end)		476 (45 - 520)259 (78 - 336)
definitionCHROMAT_FILE: MSMg01no363_a18.b1 PHD_FILE: MSMg01no363_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:38 2005CHROMAT_FILE: MSMg01no363_a18.g1 PHD_FILE: MSMg01no363_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,923,060 - 150,923,532)(150,733,161 - 150,733,406)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGACTGTTGGGATGGAAGGACACGTGAGTCACCGTGAACACTGC
AGGGAATGTGTTGTTGCCAATCAGCAAGGTGTGCTCCTGTGCAGAGCTAA
AATAGCTCAGATGACACAGAGAGTAGATTACTCCTAAAGCACCAAGTGGG
GGATGCGGGAGCTTGAAAGGTTCAGGGCTTCACAGATCTAAGCATCCAAA
CTCAGACCTATGGGATGGAGCACCGGGGAGACTTGGGGTTGCCCCTCCAT
ACACAGGGCATACAGTGGCCCGGAGAGAAGAAATATTCTATGAATAAGTC
TGATATGTCAGGTCACAAGATGACATACATTTCAATTCCCTATTATATTA
CAGCAGGGCAATGCTCAAAAACCTTGGAGATGCCACAGAGCAGTGTCCCG
GGAGTCAAGCGGACTCAGGTCCAAACCCTACTGTAGGCACTCACTTCCCG
TGTGGTCTTTAAGAAATTATCTAAAATAAAGTCAAGTCAGCTTGATATGT
TGACTTGTGATTGTAATTTAAACCCTTGGGGGGTGGTAAGAAGTTCACTT
AAATCCTTTTGCGTTTCTTTGGCTATCGTTGCTATTTTGGGAACTTTTTT
AATTCTTCCCTTTGCTCCTTTTTTCTCCTCTTCTCGTATTTCTCACATCC
CCCACTTCCCTTCTGAGATTCTCCCTTTTGTCAGTTCTCCGTCTTTCTGG
TT

NTTCATGACTTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAATTTTATTGCAGCTGAAACTC
ACTTAAATGCTACTAGCCAAGGGGAAAAAGGAAACAGGTGACGTCAGAGT
CAGGTGAGCATCTGCTAGCCACACCATCACTGAGCTAGTGTCAGGTGACC
ATCTCATAACTGTGCCATCACTGTCCTAGGGTCAGGTGACCATCTGCTAG
CTACACCATCACTGTTGGTCGTGAAAGGAATATTGGGCATGTAAAACTAT
TTTAGTAAGAGTAAATCCGTGTGTGGGGTGTGAGTGTGTGCGAGCGTCTG
TTTGTTTTGTTTTTTTTTTTCTGTTATCTTTTTTTTTATCTTACTCTCCC
TTTTTTTATTTATTTTGTTTTTTTTACCTTCTTTTTTTTGTTTCTTCCAC
TTTTTATCTGTTTATGATTTTTTTTCCCATCCTACCTTCATTATTCTTCT
ATTTTTTCTCCCTAATTTTGTCTCGTCTTTTCTTTTCTTCTCTGTCTTGC
GCGATATTTTTGCTTTCTGTTGTCTATTTTTTCTTTTTTATTTCTTTCTT
TTTTTGTTTCTTGAGTTTTTTTGTTTCTTTCATACTTTGTATTATTATTG
TGTTCTTTCTACCTTTTTATTCTTCATTCCCTACCGTACTTCGTTCCATT
TTATCTCTTTTTCTTGTCTGATAATTTGTTTGTTTTTGCTCCGTTTTTTC
TTTCTTATTCTCTTATTTTTTCTTCATTTTTTTCTTATATTTTATTGTTT
CTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a18.b1 MSMg01no363_a18.b1 CHROMAT_FILE:
MSMg01no363_a18.b1 PHD_FILE: MSMg01no363_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:38 2005
         (476 letters)



>mm_chr5_150922857_150923732
          Length = 876

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgactgttgggatggaaggacacgtgagtcaccgtgaacactgcagggaat 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ggaattctctgacagttgggatggaaggacacgtgagtcaccgtgaacactgcagggaat 617

                                                                       
Query: 64  gtgttgttgccaatcagcaaggtgtgctcctgtgcagagctaaaatagctcagatgacac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgttgttgccaatcagcaaggtgtgctcctgtgcagagctaaaatagctcagatgacac 557

                                                                       
Query: 124 agagagtagattactcctaaagcaccaagtgggggatgcgggagcttgaaaggttcaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agagagtagattactcctaaagcaccaagtgggggatgcgggagcttgaaaggttcaggg 497

                                                                       
Query: 184 cttcacagatctaagcatccaaactcagacctatgggatggagcaccggggagacttggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cttcacagatctaagcatccaaactcagacctatgggatggagcaccggggagacttggg 437

                                                                       
Query: 244 gttgcccctccatacacagggcatacagtggcccggagagaagaaatattctatgaataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttgcccctccatacacagggcatacagtggcccggagagaagaaatattctatgaataa 377

                                                                       
Query: 304 gtctgatatgtcaggtcacaagatgacatacatttcaattccctattatattacagcagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtctgatatgtcaggtcacaagatgacatacatttcaattccctattatattacagcagg 317

                                                                       
Query: 364 gcaatgctcaaaaaccttggagatgccacagagcagtgtcccgggagtcaagcggactca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcaatgctcaaaaaccttggagatgccacagagcagtgtcccgggagtcaagcggactca 257

                                                                
Query: 424 ggtccaaaccctactgtaggcactcacttcccgtgtggtctttaagaaattat 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggtccaaaccctactgtaggcactcacttcccgtgtggtctttaagaaattat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_a18.g1 MSMg01no363_a18.g1 CHROMAT_FILE:
MSMg01no363_a18.g1 PHD_FILE: MSMg01no363_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:38 2005
         (259 letters)



>mm_chr5_150732961_150733619
          Length = 659

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattttattgcagctgaaactcacttaaatgctactagccaaggggaaaaaggaaacag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 taattttattgcagctgaaactcacttaaatgctactagccacggggaaaaaggaaacag 260

                                                                       
Query: 61  gtgacgtcagagtcaggtgagcatctgctagccacaccatcactgagctagtgtcaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacgtcagagtcaggtgagcatctgctagccacaccatcactgagctagtgtcaggtg 320

                                                                       
Query: 121 accatctcataactgtgccatcactgtcctagggtcaggtgaccatctgctagctacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accatctcataactgtgccatcactgtcctagggtcaggtgaccatctgctagctacacc 380

                                                                       
Query: 181 atcactgttggtcgtgaaaggaatattgggcatgtaaaactattttagtaagagtaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcactgttggtcgtgaaaggaatattgggcatgtaaaactattttagtaagagtaaatc 440

                 
Query: 241 cgtgtg 246
           ||||||
Sbjct: 441 cgtgtg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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