BAC Information

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BAC

Clone NameMSMg01-363B06
Chromosome5 (Build37)
Map Location 142,863,168 - 142,863,579
singlet/doubletsinglet
Overlap genenone
Upstream geneSdk1, LOC666727
Downstream geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363B06.T7 (MSMg01no363_b06.b1)MSMg01-363B06.TJ (MSMg01no363_b06.g1)
ACCAG471606AG471607
length2,104773
length of high quality
(start - end)
---412 (83 - 494)
definitionCHROMAT_FILE: MSMg01no363_b06.b1 PHD_FILE: MSMg01no363_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:40 2005CHROMAT_FILE: MSMg01no363_b06.g1 PHD_FILE: MSMg01no363_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACTTGACTTGCGCCCCTCCTGTCTCACTCTAGAGAATATCTGAACGCA
CTACTACCGATAGACAGTAAGATACGGCAGCGCGAACATACGTGCCGGAT
ATATCAATGTCATTCTGCGCTGGCAGCTCTGATCTTGCTCGCGTGTTGAT
TGTGTCTCTGTGTGTGNAATGATAGGCAGTGATTACTAATATATACATGT
GCATACAATGATCGCAACATGCAGAGTGCGAATATCGCGCACTACGCAGA
ATATCAGGACTACGTTCATACACGTATTCTTTCGCACNCACGCACTATCG
TGTCACGAGCGTCGAGNGCTAGCGACGAGTCGCTAGGCGATCGGCTCGAT
AGCGTTGCGTGCGTGCAGCGAGCAGATCGGCAGACGTTAGGCNGACGCGT
AGCGGTTGATACATACTATCGTCGTAGTGCTACGAGTTGACTCNATTATG
ATATCAGTCGGAGACGACGATACGCACGCACGTAGTNGCACTGCGACATA
TCGAATCAATGCATCTATGTNTGAGAGTNAGTTCGCANTCGTGAGTGTAC
TGACGAGATCATCGCACGGTATGCTCATNTACGATACGATGTAGTCGANG
CGGAGGCATTAGNCGACGACGTGCCGTATACACTACTTAGTAGATCACTA
CAATGTGCGTGCGCGCGCGGTCGACACGTGTATATCACGTTATTGAGCAT
TGAGACGTGNAGCANCGCGTATGTCTCGGCGCGCATCTGAGTATATATAT
TACCGCGGACGTATATGACGTAGACGCATGCTACTATATGGTTNTTGACC
ACACTCGTTGCGTGCTGTGNTTTATCTACGCGTAATATATNACATGTTAT
GATGNGTAGANGAGATCGANTATACCANCGCGTCATCTGANGCGTANCGC
TCTGCGTACTGATTCTATTATCTATCGTCANTGCGNTGATGNAGCTGCGT
ACTNATATTNTGTCTCCGTCGTCGCGATCTCGCAATGAACTATACTCGAN
CGNNCGCGCACGGACTCGTCGGTGCGTCACTGATCTAGTGATGTGCGTAT
ACAATACTGCGTCAANTACTGNTGACGTCACGTACNTGCGCGCAGCACTA
GTGNATCGATCGAGCGATCAATAATTAGTGATTGACGTANTATGNCTTGT
CAATNTCGCATGTGCCACAGGCNTACGATNCGTAGGATACACGCATACTG
CCATTATANTCTCNCATGATAGTAGCTACTCGCANCAGGATGACACGTCG
ATCTCNTNTCACNTGCTGCGACGATGACGACGAAATTGTAATTCATACTG
ACGCTGTCACACNTGACTATATTTNGCATTANACACGCTGAGCGCGACGA
CNGNCTGTGTGTGCGATCGTGATGTGACGACGTCGCTACTGAGTCNTACG
TAGTCTTTATAGTAATGTCATTGNTAGTACTCTCAGATGCGTCAATAAGA
ACACTAGTGATGTCGACGAGCAGCGTCGCGTNATGCGNGACTAGTACCGT
CANATTANCTCAATCTNATGAAGTCACANACTGTTTTAGCGAGATGTAAG
CGCAACAGTACGNTCATGNANCGCCGCATNGGATATATGTACGNACGCNC
ATAGCGGACTGANCGTGAGTGACACGATGCATCATATACAGTCGCAGGTC
GTACGCGTGTATGGTAGCCGTCGACGGTAGCGNCGAGGACAGCGATNACT
CNAGCGNTAGATAGATTANATCATNAGCTGATATGAGTGCGATGACTNGT
GACCGTNACTAGTACTACAGTCATAGTANTCGAATCGACTCTACGCTATC
GTCTCGCANCGTATCATCATAGTATTTATGAACGTCGACNCATACTCNGA
TGATGNTGNGAGCGACCGATCGTCATGACTNCGTTTCGTACTCAGTAGTG
TGCCATCGTNTGCTGTANCTCTCACCGTACTGCTCNTACGTCATCGCGTA
CCGCTCATCTCTGATCTGCTNTATCGTACTGCAGCGATGTATNCATACTG
NGTCGATGTNAGCCCGCGAGCTCATAGTTTNTCGCTACGCACGTGCGGTC
GCCGGGNCGGCGTCCGTGCTGCGAATTATNGTCTGCGTTACTACTCGAAG
CCTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTTGTTTAAGTTGG
CTGGGCTTGGTTTCCATGGCTCAAAACCATCCAGCCATCCACCATTCTGG
GTTGCCTTCCCTGTCTTTGCCTCCCGGAGCGTCGGAGCCGATATAAACTA
AGAACGCCTCCACTGTGCGTGGGGGACGAAGGGGCAGTCAAACAAACGGG
GAGGCTGTGGCTGTGGCTTGGTTGAGACAGCATTTGCTTAGCATGCATAA
ATCCCTGAGTTTGATTCCCAGCACCTATATATAAATCAGGCACGCTGACA
GGAACTCCTAATCCCAGCACTCAGGGATGTGGAGGCAGGAAGATCCTCCA
CACATCCTTAAGCGACATCACAAGTCCAAGGCTAGCCTGAGCACACAGAA
TCCTGCCTCAAAAAACCTAAAGGAGACAAAATACAGACTATAATAGACTC
TGATCCATTTGATTCCACCCCAAAGGAGGGAATATATACAACAGGAGGAA
GCAAGCAGATGCCTCTTAGATCCCACTCTGATAGAAACCCAACCAAGAGA
TGGACAATACTGGATAATGGATCCATGAAAAATTTTTACTGATTTTCATC
TGGTCTGGCCCTTATAAATGGCCTGTTAGAAAAAAATAGGTTTATAGTGC
TTTCTTTTAAGGACCATGTTAGATCCTGTAGATGTTTTCTTTGTGGATGT
TACATTTTTTTGTATATCGTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_b06.g1 MSMg01no363_b06.g1 CHROMAT_FILE:
MSMg01no363_b06.g1 PHD_FILE: MSMg01no363_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:40 2005
         (412 letters)



>mm_chr5_142862968_142863779
          Length = 812

 Score =  781 bits (404), Expect = 0.0
 Identities = 410/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttttgtttaagttggctgggcttggtttccatggctcaaaaccatccagccatccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttttgtttaagttggctgggcttggtttccatggctcaaaaccatccagccatccac 260

                                                                       
Query: 61  cattctgggttgccttccctgtctttgcctcccggagcgtcggagccgatataaactaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctgggttgccttccctgtctttgcctcccggagcgtcggagccgatataaactaag 320

                                                                       
Query: 121 aacgcctccactgtgcgtgggggacgaaggggcagtcaaacaaacggggaggctgtggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgcctccactgtgcgtgggggacgaaggggcagtcaaacaaacggggaggctgtggct 380

                                                                       
Query: 181 gtggcttggttgagacagcatttgcttagcatgcataaatccctgagtttgattcccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggcttggttgagacagcatttgcttagcatgcataaatccctgagtttgattcccagc 440

                                                                       
Query: 241 acctatatataaatcaggcacgctgacaggaactcctaatcccagcactcagggatgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctatatataaatcaggcacgctgacaggaactcctaatcccagcactcagggatgtgg 500

                                                                       
Query: 301 aggcaggaagatcctccacacatccttaagcgacatcacaagtccaaggctagcctgagc 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 501 aggcaggaagatcctccacacatccttaagtgacatcacaagtccaaggctagcctgagt 560

                                                               
Query: 361 acacagaatcctgcctcaaaaaacctaaaggagacaaaatacagactataat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacagaatcctgcctcaaaaaacctaaaggagacaaaatacagactataat 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)