Query= MSMg01no363_d04.b1 MSMg01no363_d04.b1 CHROMAT_FILE:
MSMg01no363_d04.b1 PHD_FILE: MSMg01no363_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:50 2005
(551 letters)
>mm_chr5_84725508_84726458
Length = 951
Score = 913 bits (472), Expect = 0.0
Identities = 530/552 (96%), Gaps = 5/552 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtacctcaggcatagccaataatatacattatccttgaaaatctctaccca 64
|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctcagtatctcagtcatagccaataatatacattatccttgaaaatccctaccca 264
Query: 65 ctctccaaggcttatatagcccttgttacacctgaaagaagagacctgctgtttcacata 124
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 ctctccaaggtttatatagcccttgttacacctgaatgaagagacctgctgtttcacata 324
Query: 125 atattgtctaagagagctatttaacttgtttcactgaatatcatccagaagagctgattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atattgtctaagagagctatttaacttgtttcactgaatatcatccagaagagctgattc 384
Query: 185 acttttcccccaatagagaagatatgcaacactaaagcccatctctagaaaagcctcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttttcccccaatagagaagatatgcaacactaaagcccatctctagaaaagcctcctt 444
Query: 245 cctgctggctgcctgaatacctggctatgctcaaaccaagccatagttaactggcataat 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 cctgctggctgcctgaatacctggctatactcaaaccaagccatagttaactggcataat 504
Query: 305 aatggtgccaagtacaacttttatatggttatggaatggtacctaaatcaaatcagaatg 364
|||||||||||||||| ||||||| | |||||||||||||||||||||||||| ||| ||
Sbjct: 505 aatggtgccaagtacagcttttatctagttatggaatggtacctaaatcaaataagagtg 564
Query: 365 tgagttgtta-----ccccctgatgccactagcacaccagggggcatgtctttcaggcca 419
||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgagtggttatccccccccccgatgccactagcacaccagggggcatgtctttcaggcca 624
Query: 420 gcattataatagttcacaagtttcataccagggtatcattgaccactaactttctcctcc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 gcattataatagttcacaagtttcataccagggtatcattgaccactaactttctcttcc 684
Query: 480 tggagattatataactttggagaagatacctaatatggatgaagtttccagattcatacc 539
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct: 685 tggagattatataactttggagaagatagctagtatggatgaagtttccagattcatgcc 744
Query: 540 tgcttaatgttt 551
||||||||||||
Sbjct: 745 tgcttaatgttt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_d04.g1 MSMg01no363_d04.g1 CHROMAT_FILE:
MSMg01no363_d04.g1 PHD_FILE: MSMg01no363_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:50 2005
(530 letters)
>mm_chr5_84908215_84909144
Length = 930
Score = 1002 bits (518), Expect = 0.0
Identities = 527/530 (99%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 1 cttatgagtctatgaagttcagtgcaagtcaacagaggcaggtgaaggcagagaataaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 cttatgagtctatgaagttcagtgcaagtcaacagaggcaggtgaaggcagagaataaga 837
Query: 61 aggaatcagaagattagaacaagccactgtagttcgaggccaagcagaggaattcaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aggaatcagaagattagaacaagccactgtagttcgaggccaagcagaggaattcaataa 777
Query: 121 gaagctgagagaagtcagattgaatcagtcagcttggtgaaaagtttgagccagaatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gaagctgagagaagtcagattgaatcagtcagcttggtgaaaagtttgagccagaatagc 717
Query: 181 tgagttgaactagccacttagagttcagaaagaactagaggggatgagtttattcaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgagttgaactagccacttagagttcagaaagaactagaggggatgagtttattcaacag 657
Query: 241 taagcctcctacaagacaacaattacatctgacaaataaaagttactttatagtagcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 taagcctcctacaagacaacaattacatctgacaaataaaagttactttatagtagcttt 597
Query: 301 gtttggctgttgaattcatcccatctgacctgcagtttcttgtcttaacctgttttattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gtttggctgttgaattcatcccatctgacctgcagtttcttgtcttaacctgttttattt 537
Query: 361 atctccagagaggagtcaaactacaaaatgcaggtatatctcaaacattttttaaaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atctccagagaggagtcaaactacaaaatgcaggtatatctcaaacattttttaaaattt 477
Query: 421 taattaggtattttcttcatttacatttccaatgctagcccaaaattcccccatcccccc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 476 taattaggtattttcttcatttacatttccaatgctagcccaaaattcccccat-ccccc 418
Query: 481 cccatcccctatccccccactcccacgtcttgggcctggcattcccctgt 530
|||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 417 cccatcccctatccccccactcccacatcttggccctggcattcccctgt 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
