Query= MSMg01no363_d10.b1 MSMg01no363_d10.b1 CHROMAT_FILE:
MSMg01no363_d10.b1 PHD_FILE: MSMg01no363_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:51 2005
(610 letters)
>mm_chr5_82665744_82666754
Length = 1011
Score = 1166 bits (603), Expect = 0.0
Identities = 609/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 1 aatctttaatggagattggaggcttgagtcttacaaaaagaacaactattctttaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctttaatggagattggaggcttgagtcttacaaaaagaacaactattctttaattct 260
Query: 61 ttaataacatcctgatcagactcttttggtatttccatctacctcttatccatgcatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaataacatcctgatcagactcttttggtatttccatctacctcttatccatgcatcag 320
Query: 121 aatttttccattataaatattttttcaaatatttttagtttttcaagatgttgaaggata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttttccattataaatattttttcaaatatttttagtttttcaagatgttgaaggata 380
Query: 181 gtcctgttggtcaaaaaaaaaaaa-gtattgttggttttctataacagattatcattgtt 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctgttggtcaaaaaaaaaaaaagtattgttggttttctataacagattatcattgtt 440
Query: 240 ttaaaatcagaaaatatattttatgataatctcattgtgtttacttgaagtgttttatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaatcagaaaatatattttatgataatctcattgtgtttacttgaagtgttttatct 500
Query: 300 tttgtttttaaatacttaagtaaaaccataatcagaatataatctatcaaaaatctattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtttttaaatacttaagtaaaaccataatcagaatataatctatcaaaaatctattt 560
Query: 360 ttaataaaatacaaaaagaaacaaacaacaacgataaacttttatgcaatttttaccagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaataaaatacaaaaagaaacaaacaacaacgataaacttttatgcaatttttaccagg 620
Query: 420 ttgtaatgtagagtgtgaggaaaactgaatccaagtacctgggtcaaactgacaccaatt 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtaatgtagagtttgaggaaaactgaatccaagtacctgggtcaaactgacaccaatt 680
Query: 480 tgactctcaaaataaaccatctcatttttccttaaaaattgataaaataaaatatactaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgactctcaaaataaaccatctcatttttccttaaaaattgataaaataaaatatactaa 740
Query: 540 agtatagtgcgaggactatgttgggtgcaacatgtttacagttaaggaactaatgctatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtatagtgcgaggactatgttgggtgcaacatgtttacagttaaggaactaatgctatt 800
Query: 600 ttatttcacct 610
|||||||||||
Sbjct: 801 ttatttcacct 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_d10.g1 MSMg01no363_d10.g1 CHROMAT_FILE:
MSMg01no363_d10.g1 PHD_FILE: MSMg01no363_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:51 2005
(297 letters)
>mm_chr5_82831725_82832421
Length = 697
Score = 543 bits (281), Expect = e-159
Identities = 293/297 (98%)
Strand = Plus / Minus
Query: 1 aaatttacataaaataaattgcttgaatgcatgttatttgaccttaaagtattacaacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatttacataaaataaattgcttgaatgcatgttatttgaccttaaagtattacaacgg 438
Query: 61 gtgcacacaacttatgctcaatattattgttctgttaaaataaactttatatcaaagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgcacacaacttatgctcaatattattgttctgttaaaataaactttatatcaaagagg 378
Query: 121 acattttaaatgaacaatacagaagcatatctatattaaatctctattcactcaccctgc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 377 acattttaaatgaacaatacagaagcatatctatattaaatctctactcactcaccctgc 318
Query: 181 acttcttcatcatttgctaagtttgcactaagacccaaactctcatattttctttgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acttcttcatcatttgctaagtttgcactaagacccaaactctcatattttctttgctgt 258
Query: 241 ttttattgttctggtgttgtctcctctgtatgtcaagatggattaaggaaattctct 297
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctttaaagttctggtgttgtctcctctgtatgtcaagatggattaaggaaattctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
