Query= MSMg01no363_e04.b1 MSMg01no363_e04.b1 CHROMAT_FILE:
MSMg01no363_e04.b1 PHD_FILE: MSMg01no363_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:55 2005
(369 letters)
>mm_chr5_47577210_47577978
Length = 769
Score = 603 bits (312), Expect = e-177
Identities = 355/378 (93%), Gaps = 16/378 (4%)
Strand = Plus / Plus
Query: 4 ggaattctttaggttgattggcaagcagcagattggggaaaagggactcttctgatagtc 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattctttaggaggattggcaagcagcagattggggaaaagggactcttctgatagtc 254
Query: 64 atgatgacaacatgcttctgggaatgcaggttgctaaggacaggtaaatggagta----- 118
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 atgatgacaacatgcttctgggaatgcaggttgcaaaggacaggtaaatggagtacatag 314
Query: 119 ----tgtgttggagctcagtccttctagacttaattggggatccagcaagcaagtgattg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaatgtgttggagctcagtccttctagacttaattggggatccagcaagcaagtgattg 374
Query: 175 aagggtggtggacatcccgggtgttaagccagcctccagggatacatcaaagataatggg 234
||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 375 aagggtggtgggcatcccgggtgttaagccggcctccagggatgcatcaaagataatggg 434
Query: 235 tcataacatgggctatagttataacaacaaattaataaatgtatagaacatcttgctaaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcataacatgggctatagttataacaacaaattaataaatgtatagaacatcttgctaaa 494
Query: 295 agcattataatgtctttttt---aaaaaaattgttttctataactgtctcttgtgaggct 351
|||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 495 agcattataaagtctttttttttaaa----ttgttttctataactgtctcttgtgaggct 550
Query: 352 atgccagggcctggcaaa 369
||||||||||||||||||
Sbjct: 551 atgccagggcctggcaaa 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_e04.g1 MSMg01no363_e04.g1 CHROMAT_FILE:
MSMg01no363_e04.g1 PHD_FILE: MSMg01no363_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:55 2005
(596 letters)
>mm_chr5_47719233_47720229
Length = 997
Score = 1015 bits (525), Expect = 0.0
Identities = 583/611 (95%), Gaps = 15/611 (2%)
Strand = Plus / Minus
Query: 1 cttatcacaattgctttagtgtcttcacataccattcagtaaagcaatggtcctttctga 60
||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 734 cttattacacttgctttagtgtcttcccataccattcagtaaagcaatggccctttctga 675
Query: 61 gaatcaaatatagcaaaaatacaaaaaaatctactgaattaaataacttggatattcttc 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 674 gaatcaaatatagcaaaaatacaagaaaatctactgaattaaataacttggatattcttc 615
Query: 121 tacactatcatcctttaaatatgactatttcttaactgtcttccaactatagactggttg 180
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 614 taccctatcatcctttaaatatgactatttcttaactgtctttcaactatagactggttg 555
Query: 181 aaatggaaaaccagaattcacgtatgtggctcacaaattgatattatctatattcactgt 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaatggaaaaccagaattcatgtatgtggctcacaaattgatattatctatattcactgt 495
Query: 241 gtaataaagttctttgaatttctccaattgataaattaactctcttttaatagaaataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtaataaagttctttgaatttctccaattgataaattaactctcttttaatagaaataaa 435
Query: 301 ttacttctattcgtattttataaataaatatgttacctatcataaatggtaaagtttgag 360
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 ttacttctattcatattttataaataaatatgttatctatcataaatggtaaagtttgag 375
Query: 361 attcaaaatagcattaaatcactctctgttgtttgaaatctcatgtttctctcatcattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attcaaaatagcattaaatcactctctgttgtttgaaatctcatgtttctctcatcattt 315
Query: 421 tatggagtctttagagagagtaagaagtaaacatggaaattataaatcccatcatttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatggagtctttagagagagtaagaagtaaacatggaaattataaatcccatcatttctt 255
Query: 481 aattagtttctggacgagtcctttgccagagtaatccccccc-ccaaaaaaaaa------ 533
|||||||||||| | |||||||||||||||||||| |||||| |||||||||||
Sbjct: 254 aattagtttctgaatgagtcctttgccagagtaattccccccgccaaaaaaaaaaaaaaa 195
Query: 534 --------ccttcagcctcaccctgttgtattcacaagcatcagctaggttgacctacat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaaaaaaaccttcagcctcaccctgttgtattcacaagcatcagctaggttgacctacat 135
Query: 586 cagtacctgtg 596
|||||||||||
Sbjct: 134 cagtacctgtg 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 997
Length adjustment: 10
Effective length of query: 586
Effective length of database: 987
Effective search space: 578382
Effective search space used: 578382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
