BAC Information

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BAC

Clone NameMSMg01-363G02
Chromosome5 (Build37)
Map Location 27,724,729 - 27,725,194
singlet/doubletsinglet
Overlap geneDpp6
Upstream gene4930584F24Rik, B930011P16Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363G02.T7 (MSMg01no363_g02.b1)MSMg01-363G02.TJ (MSMg01no363_g02.g1)
ACCAG471833AG471834
length744749
length of high quality
(start - end)
231 (74 - 304)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no363_g02.b1 PHD_FILE: MSMg01no363_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:04 2005CHROMAT_FILE: MSMg01no363_g02.g1 PHD_FILE: MSMg01no363_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATT
CTCTATCATACAAGAAGGAGGAGTTTATATAATCAGGTACTTTGGTGCAT
TTATCTAAAACTTAATCACACACACACACACACACACACATACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACAAA
CACACACACACCAGAAGTGTACAGCAATAAACATTTTAGACAGTGTGGAA
AACATAAATGGTAAAAATCAAAATACGGCAGCTAGACCCAGCGTGCTTAC
CAGCTGCTGGCCTTTTGGGCTCCCACCCTGCATACTGAAGCTTTGCGGTG
CTGACTTCTGGCGGGCCCAGACTCAGAGGGTCCCTGAGGAGACAGACAGA
CAAACAGAAACAAAGCACAGTGGTGGGAACCAAGAATATACTATGCTCCT
ACGTGGTGCGTGACAGTCTTACTCTCCTCTTTCTCCTAGCTAGTGAACAA
TATGTCGCACTCAGCTTCCACCAGATTTCTGCAGATGCACATAATTCATA
TAATGCTGACCCATGTTCAGTGGCACTTACGCCAAATGGTAAATATCCAT
CACGAGAAAACATGCAGAGAACTCTACAGACCCATTTTTAAAGGGTCAGG
GCAGATAGACCTCCTCGATAACCCCGTGCCGGGAGGGGGGGATTCCCCAG
ACCAAAGGTGGCATCAGAAAGTTGCGCCGTTCGTAAAATGTGTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCCGAGAAATTCCACAAAGCTAATTAGTTGATCTTATCC
CACATCAGAGCTGATGAGATGAAGATCCAAGTCTTTAAAGAAATCCAGTG
AATTTGGCATTTTCCAGTTAAAAGGACAGGGAAGGAAGCAAGCATTCCAG
GTAGACAAAGAATTTGGTACTTCTACTTAAGGTGCCATCTCTTATTCACA
CAAAACAAGAGAAGTAGCTCGGACAGTCTAGCCTAGTCAGGCCTTGTGGA
GAACCTTGAGCATCTTTCCGAAGAAGATAAATGGATTTTGTGGCTCTAGT
GGAGATAGCCTCTTATGAGGGAGAGCCAAAATCCAGGGCATTTTGACCTC
TGTAAATAGGATAAAAGCTAGCAGATTTTTTCAAATCTTTTCGAGAGGGG
CCATTAACTGAGCATGTCTTCTCAGGGTGGATATTAGTTCAAGGACAACC
TAAGCTTCTCCCAGGTGTTTTCAGTCAAGATGGGGGAGTGCTGGCCTGGA
AGTCTGCAGACAGATAAACAAGAACGAACCGTTAACTTAAAGATAGCCAG
GGTACAGATGACATAAATGGGGACTAAATATCTAAAGGGTGTTTCCTGTA
TCTTTGAACACCCAAAAACCCACTTATCTACATGGTACTATTGAGCTCAG
TTCCGGACAAGCATATCTTTTTTCTCTGGATCCTCCAATAAACCTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_g02.g1 MSMg01no363_g02.g1 CHROMAT_FILE:
MSMg01no363_g02.g1 PHD_FILE: MSMg01no363_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:04 2005
         (466 letters)



>mm_chr5_27724529_27725394
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 461/466 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaagctaattagttgatcttatcccacatcagagctgatgagatgaagatccaagtc 60
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 201 cacaaagctaattagttgatcttatcccacatcatagctgatgaaatgaagatccaagtc 260

                                                                       
Query: 61  tttaaagaaatccagtgaatttggcattttccagttaaaaggacagggaaggaagcaagc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaataaatccagtgaatttggcattttccagttaaaaggacagggaaggaagcaagc 320

                                                                       
Query: 121 attccaggtagacaaagaatttggtacttctacttaaggtgccatctcttattcacacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccaggtagacaaagaatttggtacttctacttaaggtgccatctcttattcacacaa 380

                                                                       
Query: 181 aacaagagaagtagctcggacagtctagcctagtcaggccttgtggagaaccttgagcat 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaagagaagtagcttggacagtctagcctagtcaggccttgtggagaaccttgagcat 440

                                                                       
Query: 241 ctttccgaagaagataaatggattttgtggctctagtggagatagcctcttatgagggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttccgaagaagataaatggattttgtggctctagtggagatagcctcttatgagggag 500

                                                                       
Query: 301 agccaaaatccagggcattttgacctctgtaaataggataaaagctagcagattttttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccaaaatccagggcattttgacctctgtaaataggataaaagctagcagattttttca 560

                                                                       
Query: 361 aatcttttcgagaggggccattaactgagcatgtcttctcagggtggatattagttcaag 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcttttcgagaggggtcattaactgagcatgtcttctcagggtggatattagttcaag 620

                                                         
Query: 421 gacaacctaagcttctcccaggtgttttcagtcaagatgggggagt 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacaacctaagcttctcccaggtgttttcagtcaagatgggggagt 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)