BAC Information

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BAC

Clone NameMSMg01-363I22
Chromosome5 (Build37)
Map Location 15,195,746 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363I22.T7 (MSMg01no363_i22.b1)MSMg01-363I22.TJ (MSMg01no363_i22.g1)
ACCAG471967AG471968
length775734
length of high quality
(start - end)		542 (34 - 575)505 (79 - 583)
definitionCHROMAT_FILE: MSMg01no363_i22.b1 PHD_FILE: MSMg01no363_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:18 2005CHROMAT_FILE: MSMg01no363_i22.g1 PHD_FILE: MSMg01no363_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACATGGA
ATTACATTTTTCAAATTTTTCATTTTATTAAAAAAGAGAGAATCATTGTC
TACAAATTCTTTTATGTCCAACTATGCAAATACAACTTCAAGTACTCTGG
AAATTCTATGATGGTGCTAACAATTTCAGGAATTTCCAACAGGACACATA
ACAATAAAAATCCATATAGTACAAGTCTTTGGTGTTAGCTGAATTTTCAA
ATCAGAAAGCAAAGAGAAGAATTTACATTTTCAGTAACTTTAGGATCTGT
GAGTGTTGTTAATTAAAATACCGTTATGAGGAGTCCAGATACAACAGGAT
ATTAGCCCATGCAACTGTATAGGGAGATACAGAAGCTACATAGTACTTCA
AGTGTTGCTATCATATATGTCTAAGTGACATTTTACAGATTAATGCCAAG
TAAAATCAAAATATAGTCCCCTACCCATTACATCTTANAACACAATGATC
TATCAACAGTTGCCATTTCACAGCAAAAAAAAAAGCAGTAGGTATAAATT
GAACACAGAACTGCTTCTCTTGTAAGAAATGAACACAGATATATAGAACA
TGTATACTTATACATTCTCTTTGAAATTCAAGGGTGGNTAATTTGCTTTA
CTACCATATAAAAAGAATCTCGCTGTGGTCAGGGAAAAAAGCTCATTTTT
CATGTTTAAAAAGTACATTGGCCGCGCGGGGNGGGGCACGCCCTTAATCC
CCCCTCTGTGGGAAAAAAAGAAAAA

TTTTTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTC
ACTAACAGAGTGTGGGTGGTGAGAACTAGTGCTTATTTGTTGATGAAGAG
GTAAGAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTA
CAGCCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAACCTTGGA
ATTGACAGCTTTATATGCTCTACATTAAAATATAACTTTTACGTTTGCTA
CATTTACATGACCAATAAACCCCTATGATTGCTTACTGCTTTATAACACT
GTTGTTAGTGTTAACCCACGTGACTGTCAGGATGTACACAGAGATGGTTG
TAACTTAGCAACTTATCTTCAGCTATTTTATAGACTGTTAAGACAACAGC
CATGATAGTATTATATTAGGACTGTCATGCTTTTAAATGTTAAAAAATGG
TTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAACTCATTGAGATT
GTTATAGATTAAACTTTATTCATTTAAAAAGTAAACTTTGTTAATGAATT
TAAACTACTAGAACCCCATAAAAAGACATAATATACTACCTTTTTATACA
AAACTTGTAATTTTAAGCATGGTATTTTGTAATTTTTACTAAGCTCACAT
CATTTTTTTTAGAATTATATTTAATCTAAAGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_i22.g1 MSMg01no363_i22.g1 CHROMAT_FILE:
MSMg01no363_i22.g1 PHD_FILE: MSMg01no363_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:18 2005
         (505 letters)



>mm_chr5_15195546_15196454
          Length = 909

 Score =  876 bits (453), Expect = 0.0
 Identities = 494/509 (97%), Gaps = 4/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagagtgtgggtggtgagaactagtgcttattt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 709 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 650

                                                                       
Query: 61  gttgatgaagaggtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 590

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 530

                                                                       
Query: 181 ctttatatgctctacattaaaatataacttttacgtttgctacatttacatgacca---a 237
           |||||||||||||||||||||||||||||||||  |||| |||||||||||||| |   |
Sbjct: 529 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 470

                                                                       
Query: 238 taaacccctatgattgcttactgctttataacactgttgttagtgttaacccacgtgact 297
           |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 469 taaaccccaatgattgcttactgcgttataatactgttgttagtgttaacccacgtgact 410

                                                                       
Query: 298 gtcaggatgtacacagagatggttgtaacttagcaacttatcttcagctatttt-ataga 356
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 409 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttttataga 350

                                                                       
Query: 357 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 290

                                                                       
Query: 417 aaatggttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 476
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 230

                                        
Query: 477 tagattaaactttattcatttaaaaagta 505
           |||||||||||||||||||||||||||||
Sbjct: 229 tagattaaactttattcatttaaaaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 909
Length adjustment: 10
Effective length of query: 495
Effective length of database: 899
Effective search space:   445005
Effective search space used:   445005
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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