Query= MSMg01no363_j18.b1 MSMg01no363_j18.b1 CHROMAT_FILE:
MSMg01no363_j18.b1 PHD_FILE: MSMg01no363_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:22 2005
(543 letters)
>mm_chr5_78725424_78726363
Length = 940
Score = 754 bits (390), Expect = 0.0
Identities = 446/466 (95%), Gaps = 3/466 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttgacttgcgagacttcaggtcaaataggctgtctcccctaggggtcttgt 63
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 463 ggaattctcttgactagtgagacttcaggtgaaataggctgtctcccctaggggtcttgt 404
Query: 64 ggagtgtgtgctctctatggttttgggtgactctggggtccctagtgccattgttgctgg 123
||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 403 ggagtgtgtgctctccatggtttggggcgactctggggtccctagtgccaatgttgctgg 344
Query: 124 ggttctaaccttcaggaaagaaatcagatctgtgggataagaaatgaggtgcagggccag 183
||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct: 343 ggttctaaccttcaggaaagaaatcagatttgtgggctaacaaatgaggtgcagggccag 284
Query: 184 gatatagtttaccactgctgggtgtgctttaagggcacatggctggtaaagactttgtgg 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 gatatagtttaccactgctgggtgtgctttaaggggacatggctggtaaagactttgt-- 226
Query: 244 ggggggtgattttacctggttgtccctattgctgaacacaacactgacaaaacttattga 303
||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 225 -gggggtgatcttacctggttgtccctattgctgaagacaacaccgacaaaacttattga 167
Query: 304 aagttgaggagtcatactctttcccacctagagccttcacctctactgactagtgttcat 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 166 aagttgaggagtcatactctttcccacctagagccttcacttctactgactagtgttcat 107
Query: 364 gtttttcaaaagtaatctgcacactaccgaaggaaaaaggaaaatactaagcctactaca 423
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gtttttcgaaagtactctgcacactaccgaaggaaaaaggaaaatactaagcctactaca 47
Query: 424 agctgcagtgttggcttgcttgaagataccggagtacaatagtgga 469
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 agctgcagtgttggcttgcttgaagataccggagtacaatagtgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space: 495690
Effective search space used: 495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_j18.g1 MSMg01no363_j18.g1 CHROMAT_FILE:
MSMg01no363_j18.g1 PHD_FILE: MSMg01no363_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:23 2005
(141 letters)
>mm_chr5_78542911_78543451
Length = 541
Score = 265 bits (137), Expect = 8e-76
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 1 tcttttctccctcatcttcacacatttgcttaatttaagctctatctgcaagactaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttctccctcatcttcacacatttgcttaatttaagctctatctgcaagactaagtt 260
Query: 61 tccatgatatttcttatctcatgcactttctctaccaaattgcttacaaaatttgattga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatgatatttcttatctcatgcagtttctctaccaaattgcttacaaaatttgattga 320
Query: 121 aatatatgaattatgtatccc 141
|||||||||||||||||||||
Sbjct: 321 aatatatgaattatgtatccc 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space: 70889
Effective search space used: 70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
