BAC Information

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BAC

Clone NameMSMg01-363N13
Chromosome5 (Build37)
Map Location 16,866,489 - 16,866,823
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131, LOC626390, LOC668142
Downstream geneLOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363N13.T7 (MSMg01no363_n13.b1)MSMg01-363N13.TJ (MSMg01no363_n13.g1)
ACCAG472186AG472187
length7551,248
length of high quality
(start - end)		612 (35 - 646)---
definitionCHROMAT_FILE: MSMg01no363_n13.b1 PHD_FILE: MSMg01no363_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:41 2005CHROMAT_FILE: MSMg01no363_n13.g1 PHD_FILE: MSMg01no363_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGAC
TTATTCTTTCATTTCTTTGGAAGAAATAATATTGAAATTCTTCTGCAATT
ATCTGTAACCTTTTCTCCTTTTATCTCATATAAAAGAGAAAAATGTTAGA
GGATATTAAAATTTTTATTAATTTTGTGGGAATTTCAAACAATGTATTTT
TATTATATTCATGCCATCTCCTCCTGTTAACTTGTCAGAGACATAACCCA
AACTCCTACCTCTAATTTCAAGTTCCCTTTTTATGTACTTAATAATGTAT
TGACTCTAATATATACTGTCCACATACTTTGCTATGTGGGGAAATCCAGT
GAAATGTGATTCACCTACTTGGTCACACCCTTAAAAAAAACTTAACTCTC
CCATAGAAGCTAAAACTCTCCATAGCTCCAAGTTAGGGGTCAATGTTTAA
GAACCACTTCCCCATCATGCTATAATGTTTAATGGCATGATCTTATGTAG
GTCTTGTGCTGGTGACCTCAGCTCCTATAAGCTAATGAGTGGAGCAGTCA
CACATTATGTCATTAATATTTTTATAAGTAATCAAAAGAAAACGAGTATT
GTTCACTACAATATATGTAGGACCTACTGCATTGGGACTTTATTAGAGTG
CAGGGGTATTAGGCTGAACAAATCGGAATGTACAATTTANGAGCAGAGTG
CANGACAATGGATGCAGGGGAAAGTCAGTAGATTAAGAATAGAGGTCAGT
GGATG

CTCTCTTACTCATATAGCGTGGTNGCGTTAGTGGGCGGGCGTGTGTCTCC
CACCGACCACAGANTGAGACCATTAAGTGAGATTTCCCTCGGATAGTCAC
TCGCCGAACTGGCGGAGTTGCCTCATATATATCGCAAGAGTTGTATATAT
CCAGATCTGTACCAACATATAAGAGAGTGGACAGTATATGCGATGCTGTT
ATTTTCATGTATTCTCCGGCACTCTGCGTGTTTATAGAGCTATGATCGAC
ACGAGTATACGGACAAGTATGAGGACAAGAGAATGAGAGACGAATAGAAG
AACGATAGAGCGTGTGTCGTCCNGCGCTGCGCTGCTGCGGACGGCGACGA
GACGCGCGCAGCAGCTCTATGCCGATACGACAAGNATATGTACTGTAGTC
GCTAGNCGGAGACGCTGCGAAGTCAGCGTGTGGTNGAGCTGGAGGAGATG
GGAGCAGCTGTACGACACACTAACAGACCCAATCAGACCACCACTGCTAT
GCTTGTATCGCGCGGATTGCTGCGCTATGCCCCTCTCCAGCAATCAATGC
TGTCGCAGGCATGTGTGGTCGTGAATGAGTGGCGGTGCGGGTATGTGTGA
CTTATATGTTGACACGAGTTATCTGAAAATGAATTTGTGTCACGTGCGTT
GTGATGTCTCACACAATCAACTANTGGTGGTTAGTGTGACTACGATCGCA
CATATGCTCGCGCAGATCCTGACATACCGTGTTACTCGCTTGACATATAG
ACAGTAGTATCTACACGAGCACATAAGGCGACTCCAAGCCGCGGCGCGAC
GAGCGTATCGCGCAATCATCAGCACGTTTCTACGTTTTACTATGTCACGC
CGTACTACTAGCGGCGCATCACATATAGTTCCCGATCGTTTTCGTAAACA
GCACGCACACGGTACGTGCGCGTATGTATACGCGCGTAACGCATGTATAT
TGATGTTCGACCGCGCGTCACGCAGATTATATTGTGTCGCGCGGCTCATA
TAGTCCTGTCGCGACTTGGTNGAACACGCGATATCGCACGCTGACCGACA
CGCTTTATGTGAGCTGCCGACCACTCGACGGTGTACGCGCGGTATGTGCG
TAATATGACGTAGTATTATTATCACCGATCTTACGATCGTGCCACATTAC
AATGTCGTTCACCACANCGCTGGTTAGCAAGAGGCGCGCACCGCCACCAC
CTCGCGTGGTGAACGTTATAGCGACTATCTGCATTGTCTGTGCGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_n13.b1 MSMg01no363_n13.b1 CHROMAT_FILE:
MSMg01no363_n13.b1 PHD_FILE: MSMg01no363_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:41 2005
         (612 letters)



>mm_chr5_16866489_16867502
          Length = 1014

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/337 (98%), Gaps = 6/337 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgactt---attctttcatttctttggaag-aaataatattgaaattcttct 60
           ||||||||||||||   ||  ||||||||||||||||| |||||||||||||||||||||
Sbjct: 335 gaattctgtgacttaaaat--tttcatttctttggaagaaaataatattgaaattcttct 278

                                                                       
Query: 61  gcaattatctgtaaccttttctccttttatctcatataaaagagaaaaatgttagaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcaattatctgtaaccttttctccttttatctcatataaaagagaaaaatgttagaggat 218

                                                                       
Query: 121 attaaaatttttattaattttgtgggaatttcaaacaatgtatttttattatattcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 attaaaatttttattaattttgtgggaatttcaaacaatgtatttttattatattcatgc 158

                                                                       
Query: 181 catctcctcctgttaacttgtcagagacataacccaaactcctacctctaatttcaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 catctcctcctgttaacttgtcagagacataacccaaactcctacctctaatttcaagtt 98

                                                                       
Query: 241 ccctttttatgtacttaataatgtattgactctaatatatactgtccacatactttgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ccctttttatgtacttaataatgtattgactctaatatatactgtccacatactttgcta 38

                                                
Query: 301 tgtggggaaatccagtgaaatgtgattcacctacttg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  tgtggggaaatccagtgaaatgtgattcacctacttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1014
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1004
Effective search space:   604408
Effective search space used:   604408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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