BAC Information

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BAC

Clone NameMSMg01-364B18
Chromosome5 (Build37)
Map Location 14,428,868 - 14,429,326
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364B18.T7 (MSMg01no364_b18.b1)MSMg01-364B18.TJ (MSMg01no364_b18.g1)
ACCAG472386AG472387
length794786
length of high quality
(start - end)		462 (48 - 509)412 (81 - 492)
definitionCHROMAT_FILE: MSMg01no364_b18.b1 PHD_FILE: MSMg01no364_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:05 2005CHROMAT_FILE: MSMg01no364_b18.g1 PHD_FILE: MSMg01no364_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTTTTCCTTTTATTGAAAATAGTTATTTTTCTCACATAATA
TATCCTGTTTAAAGTTTCCCCTTTCTGTACTCCCAGTTCTTCCACACCTC
CCCTCCCATCCAGATCCACCCCTTTCTGCTTCTCATTAGAACACAAACAG
GCTTCAAATGGATACTAACGAAAAGTAAAATAAATTAATATAAAACAAAG
CTAACACATGGGGATGAGGCAAAGCGACAGAAAAAAAAGTCCAAGAAACT
GATATAGACAGAATACCTATTTATTTACACACTCAGGGATCCCATAAAAT
TACTAAATGGGGACCCATATTATATGTGCACAGGATCTGTAGAGTATAAA
GAGAGAGAAAATGAAATATATAAGTAAGATTAAAAATTTAAAAAATGAGA
TCGAATTATAAAATAAAAGAAGAAAAAGCCCAATACAAAATTACAAAAGG
AGGACCCTCCAAAATGCAGTTGAATTTATTTTTTTGTTGGGCATCTACTG
CTGGGGTATAAGCTTGCTCCTAAGACAAGTTTGGTTTTCCAGTAAACCTT
CTTCCCAGGAACCTATTTTTTATTACCCAGGGCTTGGCAATTGGAAATTG
GTTCCTAAAAAAGGAGGGGGAATGGGTCCTCCCCCCTTGGTTTGGGGACC
CCATTGTGGGAACCTGCAGGGTCGGGGGGGGGGTTCCCTTGAAAAGGGTT
GGGTTCCTATCCCGGTGAGCTAAAGAGATGGTTTTATTTTTGTT

NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCTGAGGAATACTGAAT
GGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGAGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCAGA
GGATTCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTGGCATTTACCAATGGAGGACTACTCCACCTATTAAAAGA
AAGGATTTTGGAATTTCTTACCCAATGCATGGGACCGGGAGGGAATATTC
CTGAGGCGGGGACCCCTTCTAAAACCAAGTAACCCATATGTATTCCTCGG
AATGGGGTATTTTTCCCCTATCTATTTGTCCCCTTGAATAGAAAAACATT
TCTTTTTGTGGGTACTTCTGTCGTAAAAAACAAAGGGGGGTCCCATGGCC
CTTCTCACACGTCGGAAACGACCCCCGTGGGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_b18.b1 MSMg01no364_b18.b1 CHROMAT_FILE:
MSMg01no364_b18.b1 PHD_FILE: MSMg01no364_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:05 2005
         (462 letters)



>mm_chr5_14428665_14429526
          Length = 862

 Score =  803 bits (415), Expect = 0.0
 Identities = 448/459 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcttttccttttattgaaaatagttatttttctcacataatatatcctgttt 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcttcttttccttttattgaaaacagttatttttctcacataatatatcctggtt 263

                                                                       
Query: 64  aaagtttcccctttctgtactcccagttcttccacacctcccctcccatccagatccacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagtttcccctttctgtactcccagttcttccacacctcccctcccatccagatccacc 323

                                                                       
Query: 124 cctttctgcttctcattagaacacaaacaggcttcaaatggatactaacgaaaagtaaaa 183
           ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 cctttctgcctctcattagaacacaaactggcttcaaatggatactaacgaaaagtaaaa 383

                                                                       
Query: 184 taaattaatataaaacaaagctaacacatggggatgaggcaaagcgacagaaaaaaaagt 243
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 taaattactataaaacaaagctaacacatggggataaggcaaagcgacagaaaaaaaagt 443

                                                                       
Query: 244 ccaagaaactgatatagacagaatacctatttatttacacactcagggatcccataaaat 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 ccaagaaactgatatagacagaatacctctttatttacacactcagggatcccataaaat 503

                                                                       
Query: 304 tactaaatggggacccatattatatgtgcacaggatctgtagagtataaagagagagaaa 363
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tacttaatggggacccatattatatgtgcacaggatctgtagagtataaagagagagaaa 563

                                                                       
Query: 364 atgaaatatataagtaagattaaaaatttaaaaaatgagatcgaattataaaataaaaga 423
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 564 atgaaatatataagtaagattaaaaattttaaaaatgagatcgaattaaaaaataaaaga 623

                                                  
Query: 424 agaaaaagcccaatacaaaattacaaaaggaggaccctc 462
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 agaaaaagcccaatacaaaattacaaaagggggaccctc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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