BAC Information

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BAC

Clone NameMSMg01-364D17
Chromosome5 (Build37)
Map Location 42,858,997 - 42,859,403
singlet/doubletsinglet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364D17.T7 (MSMg01no364_d17.b1)MSMg01-364D17.TJ (MSMg01no364_d17.g1)
ACCAG472479AG472480
length782783
length of high quality
(start - end)		416 (50 - 465)436 (79 - 514)
definitionCHROMAT_FILE: MSMg01no364_d17.b1 PHD_FILE: MSMg01no364_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:16 2005CHROMAT_FILE: MSMg01no364_d17.g1 PHD_FILE: MSMg01no364_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTCTCCAGTGCAGCCCCTGATGTTTTTCATAATATCTTTT
ATTTCCTACCAAGGTGTTTGGGTATCCCCAAAACAACCTTACCTGTCAGC
ACCCTGTAGGAAGTATCTCAGTTAAGAAACAGCAACTGCTTAAAATGATA
ACACACATATTTCCTTGGATGATCTATACCTGAGGACCAATGAATGATGA
GTTTGGTAATGAAGGATTCTGGTGAGTTTGGTAATTTTGAACTGAATGTT
CCTATTGATCTAATCTATGGTAGTTTAGGCACACCTTATCTGAAGTGCTT
TTAAAAAAAATGTATTTTAGGTTTCTTTTTAGACTTTGGAATTTTTTTAT
ATAGTGAGATAGTTTAGGATCTAAGTTTAAGCATATAATTATATGTTTTA
TATATATATATACCTACATAGGATATATATATATATATATATATATATAT
ACCCATACCCACCCCCATATAGGGATATATATATTTATATACCACATTGA
GCCCCAAACATTTTTGAAAATATTTGTAATGTGGCCGTTGCTCTATCTAC
ACCCCATTTTTATTGTGTAACCCAATTTTCATTTTTCCTTGGGGATTCCC
TCTTCCTCCTAGCTCCCTTCTTCGTTTCCTTTCCCTTGTAACCCTCTTCG
CGTATATCCTCCCCTTCCTATCGCTTTTTGTTTCTTTTTCTTCTTTCTTA
CGCCATCCCTTCGTATTATTTTCGCTTTAATA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCCCATACCTAAACATGAT
AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGA
AGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTT
TCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCG
ACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAA
TATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAAT
TCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGG
ATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATA
AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACA
AATAATATAAAATATCTTGGNCGTGACTCTAACTAAGGAAGTTGAAAGAT
CTGTATGATNAAAAACTTCAATCCCTGAAGAAAAGAATTTAGGAAGATCT
CCAAAAATGGAAAGAACTCCCCTGGTCCTGGAATGGGGGGATCCAATTTG
TAAAAATGGTTATTCTGGCCAAAAACAACCACCGAATTCTAGGGGTTCCC
CCCCAAATTCCACCCCAATTTTTTCCCGAATTGGGAGGGCAAATTGGACA
TTTTCGGGAAAAAAAAAAACTCTGGATAGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_d17.b1 MSMg01no364_d17.b1 CHROMAT_FILE:
MSMg01no364_d17.b1 PHD_FILE: MSMg01no364_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:16 2005
         (416 letters)



>mm_chr5_42858822_42859636
          Length = 815

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattctccagtgcagcccctgatgtttttcataatatcttttatttcctaccaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggaattcattctccagtggagcccctgatgtttttcataatatcttttatttcctaccaa 523

                                                                       
Query: 64  ggtgtttgggtatccccaaaacaaccttacctgtcagcaccctgtaggaagtatctcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggtgtttgggtatccccaaaacaaccttacctgtcagcaccctgtaggaagtatctcagt 463

                                                                       
Query: 124 taagaaacagcaactgcttaaaatgataacacacatatttccttggatgatctatacctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 taagaaacagcaactgcttaaaatgataacacacatatttccttggatgatctatacctg 403

                                                                       
Query: 184 aggaccaatgaatgatgagtttggtaatgaaggattctggtgagtttggtaattttgaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggaccaatgaatgatgagtttggtaatgaaggattctggtgagtttggtaattttgaac 343

                                                                       
Query: 244 tgaatgttcctattgatctaatctatggtagtttaggcacaccttatctgaagtgctttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgaatgttcctattgatctaatctatggtagtttaggcacaccttatctgaagtgctttt 283

                                                                       
Query: 304 aaaaaaaatgtattttaggtttctttttagactttggaatttttttatatagtgagatag 363
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 -aaaaaaatgtattttaggtttctttttagactttggaatttttttatatagtgagatag 224

                                                           
Query: 364 tttaggatctaagtttaagcatataattatatgttttatatatatata 411
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tttaggatctaagtttaagcatataattatatgttttatatatatata 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space:   328042
Effective search space used:   328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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