BAC Information

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BAC

Clone NameMSMg01-364K03
Chromosome5 (Build37)
Map Location 108,948,566 - 109,128,781
singlet/doubletdoublet
Overlap geneCplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1
Upstream gene1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557
Downstream geneLOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K03.T7 (MSMg01no364_k03.b1)MSMg01-364K03.TJ (MSMg01no364_k03.g1)
ACCAG472782AG472783
length791754
length of high quality
(start - end)
381 (80 - 460)421 (82 - 502)
definitionCHROMAT_FILE: MSMg01no364_k03.b1 PHD_FILE: MSMg01no364_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005CHROMAT_FILE: MSMg01no364_k03.g1 PHD_FILE: MSMg01no364_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,948,566 - 108,948,946)(109,128,361 - 109,128,781)
sequence
TTTGTTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTAAGCCATATCCCGCAGAGCAACAAAGAAAGAGACAGC
TGGACAAAATATGCAAAGGCTGCTGGGGAAGACTAGGGTGGTAGCTCACA
GACAGGAAGACAGAGCGAATGGTCCAGCAGGTCCAACAAGTCCAGAAACT
GGGGCAATGGACTCAGGGAAGGGCTGGGGGCCCCAAGCACCCACTGCTCA
TTCCCCAAGTCCCACCCCACTATGGCTGTGCTCCTGAGTTTAGGCCCTGA
CTGGTAGCCACCCATCCAGGGGTGGTCAGGGCTGGCCCTCGGGGCCTGAC
CTTGGGCAGGCTCTGTGGGGATGGTGAACTTAAGATTAGTAAGGAGGGGT
CCAACCACCCGAAGGCAAGGATACACAGCACAGGGGCCTGAGGGTCACAC
CCTTGCCTGGTGGGGTCAGTGATGGCAGTATGGGGAGGTTTGGCCTTATG
CTTCCCTACTCTCACGATTTTTATGTTCATTATATATCTTTTCTCCCTCT
TTATTACTTTTGCGGCTCCGTTTTTCTTTTCCTCCTTCTTCTCCTACTTT
CCTGCCTTCAACTCTTTCTTCTAATTCTCTTTATCCTTCTCTGCCCCTTT
TATAGTTTACCTTCTTCTTTTTACCCCTAATACTTTCCTCTCCCGTCTTC
TTTCCCCTGTTCTTTTATCCCCAACTCTCTCATCATGCATATATACATAA
TATTCTTCGTCGCCCCCTATTTTTGTCTTCTTTTTCGCCCG
NTTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGCCAGGCAATGAGAC
TGGCTATGGAGTTGGTCAGCTAGCTCAGAGTGAACATGCTCCTGGAGCTA
CAAAGTGATTATCTAGGGGACTCTGAGAATGGTGTGGAGAGTCTCAACAG
CAAAGGAGCAGAATAGGCTCATCTGGTTCTCGGGACACCTTGCTCCAAGA
CCCAGAGGGACTACAATAGGAGCCAACCCAAGCAGAATCACAAGGCACCT
GTCCAACAGTGACAGGCCTAATAGGTAATGAGCTTTCTATAACTGGTGTG
ACACACCCCTACAAAGGCACTGCCCTAGCCCCTGGCTGTGAGGACATATA
TCCCACAGTACTCACAGCTGGAGTCCCAGGACAGGGACAGGTGAGAAACC
CACAGACAGTCCTCTAGGGCCAACACCTGCTAGAAGGCCAAAGCCCAGGA
AGTGGCAGAGATGCCCCTCATAAGAAACAAGCATAGGTGACAGTCACAAG
GCCCAACTGCCTATTAGGTGTGCGGGGCCAGGCTTTGTCTTGTCTTGAGG
CTAAGATCCTTGAAAGAATATAACTGCATGGACACACCCACCAACACATG
TGTGTGCATGTAACAACTCCCCAATTGTGGGCCGGTACACTCCACTCCCA
CGAATTTTGGGAGGAATAACCCTTCGTAAAATAACTGAAAAGGTGCTCAT
GGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k03.b1 MSMg01no364_k03.b1 CHROMAT_FILE:
MSMg01no364_k03.b1 PHD_FILE: MSMg01no364_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (381 letters)



>mm_chr5_108948366_108949146
          Length = 781

 Score =  721 bits (373), Expect = 0.0
 Identities = 379/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaacaaagaaagagacagctggacaaaatatgcaaaggctgctggggaagactagggt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaacagagaaagagacagctggacaaaatatgcaaaggctgctggggaagactagggt 260

                                                                       
Query: 61  ggtagctcacagacaggaagacagagcgaatggtccagcaggtccaacaagtccagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagctcacagacaggaagacagagcgaatggtccagcaggtccaacaagtccagaaac 320

                                                                       
Query: 121 tggggcaatggactcagggaagggctgggggccccaagcacccactgctcattccccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggcaatggactcagggaagggctgggggccccaagcacccactgctcattccccaag 380

                                                                       
Query: 181 tcccaccccactatggctgtgctcctgagtttaggccctgactggtagccacccatccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaccccactatggctgtgctcctgagtttaggccctgactggtagccacccatccag 440

                                                                       
Query: 241 gggtggtcagggctggccctcggggcctgaccttgggcaggctctgtggggatggtgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtggtcagggctggccctcggggcctgaccttgggcaggctctgtggggatggtgaac 500

                                                                       
Query: 301 ttaagattagtaaggaggggtccaaccacccgaaggcaaggatacacagcacaggggcct 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ttaagattagtaaggaggggtccaaccacccgaaggcaaggatgcacagcacaggggcct 560

                                
Query: 361 gagggtcacacccttgcctgg 381
           |||||||||||||||||||||
Sbjct: 561 gagggtcacacccttgcctgg 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no364_k03.g1 MSMg01no364_k03.g1 CHROMAT_FILE:
MSMg01no364_k03.g1 PHD_FILE: MSMg01no364_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (421 letters)



>mm_chr5_109128161_109128981
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggccaggcaatgagactggctatggagttggtcagctagctcagagtgaacatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggccaggcaatgagactggctatggagttggtcagctagctcagagtgaacatgctc 562

                                                                       
Query: 61  ctggagctacaaagtgattatctaggggactctgagaatggtgtggagagtctcaacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggagctacaaagtgattatctaggggactctgagaatggtgtggagagtctcaacagc 502

                                                                       
Query: 121 aaaggagcagaataggctcatctggttctcgggacaccttgctccaagacccagagggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggagcagaataggctcatctggttctcgggacaccttgctccaagacccagagggac 442

                                                                       
Query: 181 tacaataggagccaacccaagcagaatcacaaggcacctgtccaacagtgacaggcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacaataggagccaacccaagcagaatcacaaggcacctgtccaacagtgacaggcctaa 382

                                                                       
Query: 241 taggtaatgagctttctataactggtgtgacacacccctacaaaggcactgccctagccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggtaatgagctttctataactggtgtgacacacccctacaaaggcactgccctagccc 322

                                                                       
Query: 301 ctggctgtgaggacatatatcccacagtactcacagctggagtcccaggacagggacagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggctgtgaggacatatatcccacagtactcacagctggagtcccaggacagggacagg 262

                                                                       
Query: 361 tgagaaacccacagacagtcctctagggccaacacctgctagaaggccaaagcccaggaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgagaaacccacagacagtcctctagggccaacacctgctaggaggccaaagcccaggaa 202

            
Query: 421 g 421
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)