BAC Information

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BAC

Clone NameMSMg01-364K17
Chromosome5 (Build37)
Map Location 9,689,831 - 9,690,313
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneAbcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K17.T7 (MSMg01no364_k17.b1)MSMg01-364K17.TJ (MSMg01no364_k17.g1)
ACCAG472810AG472811
length774760
length of high quality
(start - end)		462 (53 - 514)483 (80 - 562)
definitionCHROMAT_FILE: MSMg01no364_k17.b1 PHD_FILE: MSMg01no364_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:52 2005CHROMAT_FILE: MSMg01no364_k17.g1 PHD_FILE: MSMg01no364_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAGGGTTTCTTATATATACTATCATATCATCTGCAAA
AAGTGATATTTTGACTTCTTCCTTTCCAATTTGTATCCCCTTGATCTCTT
TTTGTTGTCTAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGG
TAGGGCAAGAGTGGACAGCCTTGTCTAGTGACTGATTTTAGTGGGATTGC
TTCCAGCTTCTCACCATTTACTTTGATGTTGGCTATTGGTTTGCTGTAGA
TTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAG
ACTTTTATCATGAATGGATGTTGGATTTTGTCAAATGCTTTCTCAGCATC
TAATGAGACGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGA
TTACGTTGATGGATTTCTGTATATTGAACCATCCCTGCATCCCTGGGATG
AAACCTACTTGGTCAGGATGGATGATTGCTTTTGAGTGTTCCTCACATCC
GTCAACAAAACCTTTTTTGAGAATTTTGCTTCCTATTTCCTATTGACTTG
TCCTTTGCTTCTTTTATTTTTTTTTCCTCTTTTTGTTTTTCCTTTTCCAT
CTTCCCATCTTTACTCTTCTCTTTCTTATCCCCCATTATCTCTTTCACTT
CATTTTCCCTTTTCTTTTTTTCCTTTAATATATTTTTCTCCTTTTTACCC
TCCTTTTAGTTTGTTATCTATCCG

TTTTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAGGATAGGGCTACTGTT
AGTTCATTCACTAAGTTAAGCACCATCATATTTTCCACTTTAATACTAGT
TAACCTTTTGATCGAAAGTGTCAGTCCATTCCTTGGAAACTCCTGAAAAT
GAAGGACAAAATGTGATTATATCTAGGAATTTTGAAGAAAGAATGGGAAA
CTCTGAGTATGAAATAATATTAGCTGTGTAAAACTAAAACTCCAAGAATC
ATAAAGTATTCTGAAGGCTGTGATAAAATCAAACTGTCTTCTGATTGTCT
ATTTATTCATTCGTTCATTTTATCTAGAGAATCATTGTCCTGCAGTGTTC
TTTAAAGATAGCCCACTCTTACTATTAAAATCATCTAAATAATGTATTCA
GCAGTTTTATAAGCATGATCATGTTTAACATTCACAATGTTCTTTATACA
GTACATTATTATTCCTATTTAGCTGAAGAAACTTTGATTTAGAGGGCTTT
ACTAATCTTTGTATTGTCAGATATATAAAGGGTGTGCAAATGAGTGAGGT
GGGCTGCCCAGGACTGTCTATCTGCTAGGACAAGAAAAACTGTAATGGGG
TGTTGGCCCCAAAGTGGAAGAAAGGATGGCCTGCTCCTTTAAAAATATCC
AAAAATTAGCACAACAATAAACTTTTTAATCTGGTGGGAGAGATAACACT
CTTATCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k17.g1 MSMg01no364_k17.g1 CHROMAT_FILE:
MSMg01no364_k17.g1 PHD_FILE: MSMg01no364_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:52 2005
         (483 letters)



>mm_chr5_9689631_9690513
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaggatagggctactgttagttcattcactaagttaagcaccatcatattttccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaggatagggctactgttagttcattcactaagttaagcaccatcatattttccact 260

                                                                       
Query: 61  ttaatactagttaaccttttgatcgaaagtgtcagtccattccttggaaactcctgaaaa 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatactagttaaccttttgctcgaaagtgtcagtccattccttggaaactcctgaaaa 320

                                                                       
Query: 121 tgaaggacaaaatgtgattatatctaggaattttgaagaaagaatgggaaactctgagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaggacaaaatgtgattatatctaggaattttgaagaaagaatgggaaactctgagta 380

                                                                       
Query: 181 tgaaataatattagctgtgtaaaactaaaactccaagaatcataaagtattctgaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaataatattagctgtgtaaaactaaaactccaagaatcataaagtattctgaaggct 440

                                                                       
Query: 241 gtgataaaatcaaactgtcttctgattgtctatttattcattcgttcattttatctagag 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gtgataaaatcaaactgtcttctgattgtttatttattcattcgttcattttatctagag 500

                                                                       
Query: 301 aatcattgtcctgcagtgttctttaaagatagcccactcttactattaaaatcatctaaa 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aatcattgtcctgcagtgttctttaaagatagcccactattactattaaaatcatctaaa 560

                                                                       
Query: 361 taatgtattcagcagttttataagcatgatcatgtttaacattcacaatgttctttatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgtattcagcagttttataagcatgatcatgtttaacattcacaatgttctttatac 620

                                                                       
Query: 421 agtacattattattcctatttagctgaagaaactttgatttagagggctttactaatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtacattattattcctatttagctgaagaaactttgatttagagggctttactaatctt 680

              
Query: 481 tgt 483
           |||
Sbjct: 681 tgt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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