BAC Information

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BAC

Clone NameMSMg01-364M10
Chromosome5 (Build37)
Map Location 30,225,888 - 30,226,135
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662
Downstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364M10.T7 (MSMg01no364_m10.b1)MSMg01-364M10.TJ (MSMg01no364_m10.g1)
ACCAG472890AG472891
length828783
length of high quality
(start - end)
247 (76 - 322)444 (74 - 517)
definitionCHROMAT_FILE: MSMg01no364_m10.b1 PHD_FILE: MSMg01no364_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:01 2005CHROMAT_FILE: MSMg01no364_m10.g1 PHD_FILE: MSMg01no364_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCAGATGTTTTGCGTTTAAGGCTGAGCAAGCTTACAGCTTGGATG
TCTAGAGAGTCACACATCTTGGTGGTAAAGGGTACCCAAAGCAATCAATT
TCTATCACAAGCCAGGAAGCAAAGTGGAAGGAATCAGTGATTTTTGAAAG
CCATTCTGAGAGCGTGCCCCGTGACCGAAAGATAGCATAAGACTCTACTA
TCTTCTATCAAGTTCCTAAGAGCAAGCGTCTGTAGACCTTGTCTTTAGCA
CACTGGCCTTTGGAGGATATTCTTCATCATACACACTTGTGTGTGATCAT
TTTCCTTCATGTTTAAATTCTTCCTCTAATTGTTCTAGTATTGCATGTTG
GTGAAAAAATTCCTTTCCTCCCCAGTTGCTTAAAACTTTCTTTTGCCTTC
ACTCTGATGATAACTGTAGACTGGCAGTTTTTAATCCCATCCCTGTGAGA
TTAGATATACTGTCTTCTTTTTGACCTCACAGTTATATTGAGGAAAGGGT
TTATTTATTTCCCCCTGCCACACCCGGTATTTTCGTTTTACCACATTAAG
TTCGCTAATTTGTTCTTGTATAACATTCAAGACATTTGTTTCCCCCCCCC
ATTTGTACATTCACCATATTTTTTTTCTTCTTCGGTACGCGAACTATTTA
CATCGCTGTTACAATTCTCCTATTCGTCCTATCCCATCCTTCCTATTTCC
TATTTTCTTTTACTTCTAGTCTCACATCCAAATGTCCTCATTCATCCCAC
TTTTCTTCTTCCACATCTAAATATATTG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGAGT
ACCAGTGAGTACAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAGG
AAATTCAAGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCTTGAA
TTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGT
GATTAAGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTATCAG
AAGTAAAGCGGGGAGAGAGAGTTTTTTCAAAGAGGAAGTATACAGGCCTT
TCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTG
GAGAGAGATTAGAAGAAAAAGAGGAAAAAGGGAAAAGAAGAAAGATCAAT
TAGCGGAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTC
GGGGAGCCAGCTCTTAGTAGCTCTGAAGCAGGTGAAGAATCCTCCTCTGA
GGAAACAGACTGGGAGGAAGAAGCAGCTCATTAATGAAAAAAAGGGTATC
CTGCCAGGTAATGTGCTAGCTAATCAGTTAAAGGAATCCAAAAGCGGCTG
GCTAATGCCCTTTTTTTTTTTTGGTCCCTACGTACATTCGTTTTCATGAT
TACTTCTTATGATGGATACCCGGCCCCTGGTACTGTTTTTCATTAATTTT
TAAATAAATTTTGTTTAAAATATGTTTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_m10.b1 MSMg01no364_m10.b1 CHROMAT_FILE:
MSMg01no364_m10.b1 PHD_FILE: MSMg01no364_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:01 2005
         (247 letters)



>mm_chr5_30225688_30226335
          Length = 648

 Score =  418 bits (216), Expect = e-121
 Identities = 241/250 (96%), Gaps = 5/250 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgagcaagcttacagcttggatgtctagagagtcacacatcttggtggtaaagggtac 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 448 gctgagcaagcttacagcttggatgtctagagaatcacacatcttggtggtaaa-ggtac 390

                                                                       
Query: 61  ccaaagcaatcaatttctatcacaagccaggaagcaaagtggaaggaatcagtgatttt- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 389 ccaaagcaatcaatttctatcacaagccaggaagcaaagtggaaggaatcagtgattttc 330

                                                                       
Query: 120 tgaaagccattctgagagcgtg--ccccgtgaccgaaagatagcataagactctactatc 177
           | ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||
Sbjct: 329 t-aaagccattctgagagcgtgccccccgtgaccgaaagatggcataagactctactatc 271

                                                                       
Query: 178 ttctatcaagttcctaagagcaagcgtctgtagaccttgtctttagcacactggcctttg 237
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttctagcaagttcctaatagcaagcgtctgtagaccttgtctttagcacactggcctttg 211

                     
Query: 238 gaggatattc 247
           ||||||||||
Sbjct: 210 gaggatattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space:   152082
Effective search space used:   152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)