Query= MSMg01no364_m19.b1 MSMg01no364_m19.b1 CHROMAT_FILE:
MSMg01no364_m19.b1 PHD_FILE: MSMg01no364_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:03 2005
(224 letters)
>mm_chr5_24670833_24671456
Length = 624
Score = 410 bits (212), Expect = e-119
Identities = 221/224 (98%)
Strand = Plus / Minus
Query: 1 caacctataatattcattatcacatttattaaaagtaactgatgtgttttacttcactga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 424 caacctatactattcattatcacatttattaaaagtaactgatgtgttttatttcactga 365
Query: 61 tggcccacaagagggagatctagaataactcagtagtcaagtacccaacgagtacagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 tggcccacaagagggagatctagaataactcagtagtcaagtacccaacaagtacagcac 305
Query: 121 cctgtgatgctgtaggaggtctgaatgtcagaaccaccaaccacagccctctggtgtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cctgtgatgctgtaggaggtctgaatgtcagaaccaccaaccacagccctctggtgtgaa 245
Query: 181 agcctcttctcttactacaaattccagaactgatcacagagcct 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcctcttctcttactacaaattccagaactgatcacagagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space: 132225
Effective search space used: 132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no364_m19.g1 MSMg01no364_m19.g1 CHROMAT_FILE:
MSMg01no364_m19.g1 PHD_FILE: MSMg01no364_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:03 2005
(423 letters)
>mm_chr5_24659734_24660555
Length = 822
Score = 779 bits (403), Expect = 0.0
Identities = 418/423 (98%), Gaps = 1/423 (0%)
Strand = Plus / Plus
Query: 1 agtggagctgataaacatgtttgccttggcacagggacacccgccccagctccctgcttc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agtggagctgataaacatgtttgccttggcacagggacacgcgccccagctccctgcttc 260
Query: 61 cttggcttctcaaccactgcaaagtgatgtgcctgacgggggctgtagtacccccattca 120
|||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct: 261 cttggcctctcaaccactgcagactgatgtgcctgacgggggctgtagtacccc-attca 319
Query: 121 cctctctgcagctgcctggcagagtctcagatgacaacagctgctgaaggaggtcagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctctctgcagctgcctggcagagtctcagatgacaacagctgctgaaggaggtcagaga 379
Query: 181 ataacaactgcagaaaatgggaattatgagagcaaagagtctgtcattgtaaagcccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataacaactgcagaaaatgggaattatgagagcaaagagtctgtcattgtaaagcccaga 439
Query: 241 tctttcccatgaagcttgaggctcaccaccaggcagggtgatgccttctggaacgttatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctttcccatgaagcttgaggctcaccaccaggcagggtgatgccttctggaacgttatc 499
Query: 301 ctgcacattggacagtcatcaaatagaaggaaaattcatgattgtgctaaaacccagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgcacattggacagtcatcaaatagaaggaaaattcatgattgtgctaaaacccagcct 559
Query: 361 ttcgtctttcattcatttatccactgtctttgtgtggtaaatgctaattaagttgctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttcgtctttcattcatttatccactgtctttgtgtggtaaatgctaattaagttgctttt 619
Query: 421 ctg 423
|||
Sbjct: 620 ctg 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space: 336582
Effective search space used: 336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
