BAC Information

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BAC

Clone NameMSMg01-365G02
Chromosome5 (Build37)
Map Location 134,791,753 - 134,792,233
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i
Downstream geneLOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365G02.T7 (MSMg01no365_g02.b1)MSMg01-365G02.TJ (MSMg01no365_g02.g1)
ACCAG473349AG473350
length730736
length of high quality
(start - end)
249 (68 - 316)481 (58 - 538)
definitionCHROMAT_FILE: MSMg01no365_g02.b1 PHD_FILE: MSMg01no365_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:52 2005CHROMAT_FILE: MSMg01no365_g02.g1 PHD_FILE: MSMg01no365_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATAAATTTCTTATTAGGAATTATGAAACCATCAATTTGTCTGCATAG
TAATACTACATGAGACTGCATCTTCATGTTGATCTGTAGAAAGTCTGCCC
AGTAGGGTGGGAGAATGCCCAGGAATCATTGGACTATGTAATAGAGACAG
GAAAAGGCTTATCAGCAGCAAAATAGCAATCCTGGCATGAAGTCTTTTGG
GACCTTGCCTCACTGAGCTCACCCAGCTCACCCATTGCAGGCCATGCAAA
ACAGTGGGCCATCTCCTTATTTATTCATTTGCATGTCTTTAGCCTTTCCT
AGATGGCTTCTGACAACTGGGGGGGTGGCTCAGTGGTAGATCACCTGCCT
AGGATCCCTCAGTGAGGGGCTGGGGGTGTGGCTCAGTGGCAAATCCCTCG
TCCAAAATCCCCCTTTGAGTTTCCGGGTCTGGTTATTCTCCGTCTTACCC
CTCGCCTCTCACACTCTTTTTTTCCCCTTTTTTTTTTTTTCCTTCCTTTC
TTTTTTCTCCCCTCCCTTCTTTTACTTTTCCTTCCCCCTTTTTCCCCCTT
CTTTTTTCCTTTCCCTTTCTTTCGCTTTTTCCTCTCCCCCCTTTCCTCCC
TCCCTTTTCGTCTTTTTTTCCTTCGTTTTCTTATCCTCCTCTCCTCTCCT
CCCTTCCATTCCTTCTTCTTCTTTCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTACTTGGACAGTGTCTTCTCCAGCTTATATCCTCCCAAGTG
TTGGAATGTCAGGTGTGCATCCCAGGACCTTGCAGAACTTTCATCCTAAG
CATATGTAGGGAAAAAAGTTTGGAGTGATTTAATTTCAGGCATGCATCTT
AGAACGTAGCCCCTGCTGCAAAGGAGTAGGACTCCTGTTTCGGTCTTATG
GAATCTGGTTAAATATTCCAAAGAGCAGTGAAATCCGGGTGCAAAGAGCA
AGTTGTTCTTTTGACAACTTAATGAATAGCCCTGGACAGAGTCGACAGAG
TTGAGTCACAATCGGATTAGGAAAGGAAACGAAGGGTGTAAATATTGTTA
GGGAAAATCGTAATAAAAACCAAAAAACGTAGGCGGCTTCTCTAATCAGA
CTGCTTCCCAGGAATCCTTAAAGACTCCGTGGAGTGCAAAGAAATCCAAC
ATGGAGATTGTAGATGAGGCTTTGTGGGTGCGGTTTCATACAAGATAGTC
GACCAGAGAACGCCAATCCTTGAACCCGATTTCTAAGGGAGGGTTTTGGA
ACTACATCTAAAGAGTGGCTTGGCCGGAAAAGTTTCCAGCCAGCGACAAA
CAGGCTGGGAGGCTGGATAAAGCCCTGAGGCCGTCCTCCACCGATAATAA
TGGGTTGGGGGAGAGGCTCCCCAAAATTTCGTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_g02.g1 MSMg01no365_g02.g1 CHROMAT_FILE:
MSMg01no365_g02.g1 PHD_FILE: MSMg01no365_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:52 2005
         (481 letters)



>mm_chr5_134791553_134792433
          Length = 881

 Score =  907 bits (469), Expect = 0.0
 Identities = 478/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacttggacagtgtcttctccagcttatatcctcccaagtgttggaatgtcaggtgtg 60
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 cctacttggacagtctcttctccagctcatatcctcccaagtgttggaatgtcaggtgtg 622

                                                                       
Query: 61  catcccaggaccttgcagaactttcatcctaagcatatgtagggaaaaaagtttggagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcccaggaccttgcagaactttcatcctaagcatatgtagggaaaaaagtttggagtg 562

                                                                       
Query: 121 atttaatttcaggcatgcatcttagaacgtagcccctgctgcaaaggagtaggactcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttaatttcaggcatgcatcttagaacgtagcccctgctgcaaaggagtaggactcctg 502

                                                                       
Query: 181 tttcggtcttatggaatctggttaaatattccaaagagcagtgaaatccgggtgcaaaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tttcggtcttatggaatctggttaaatattccaaagagcagtgaaatccgggggcaaaga 442

                                                                       
Query: 241 gcaagttgttcttttgacaacttaatgaatagccctggacagagtcgacagagttgagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaagttgttcttttgacaacttaatgaatagccctggacagagtcgacagagttgagtc 382

                                                                       
Query: 301 acaatcggattaggaaaggaaacgaagggtgtaaatattgttagggaaaatcgtaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatcggattaggaaaggaaacgaagggtgtaaatattgttagggaaaatcgtaataaa 322

                                                                       
Query: 361 aaccaaaaaacgtaggcggcttctctaatcagactgcttcccaggaatccttaaagactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaaaaaacgtaggcggcttctctaatcagactgcttcccaggaatccttaaagactc 262

                                                                       
Query: 421 cgtggagtgcaaagaaatccaacatggagattgtagatgaggctttgtgggtgcggtttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtggagtgcaaagaaatccaacatggagattgtagatgaggctttgtgggtgcggtttc 202

            
Query: 481 a 481
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)