Query= MSMg01no365_k12.b1 MSMg01no365_k12.b1 CHROMAT_FILE:
MSMg01no365_k12.b1 PHD_FILE: MSMg01no365_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:13 2005
(244 letters)
>mm_chr5_151452551_151453194
Length = 644
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 tgagctgtaaatagtttaccaatataaactgataaaatagaggtaaggacatttcagtgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 tgagctgtaaatagtttaccaatataaactgataaaatagaggtagggacatttcagtgg 385
Query: 61 gcctcttgtacaccttatgaataattcaaagagctctggtacctttgttttgtagtatgg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 gcctcttgtacaccttatgaataattcaaacagctctggtacctttgttttgtagtatgg 325
Query: 121 aaattatttctaccctgaataatactaatgtcttgaatcttaataaaaatacctgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattatttctaccctgaataatactaatgtcttgaatcttaataaaaatacctgtttta 265
Query: 181 gtcttactatacaggttgatactaaaagaaccctatttaatgcttcattttagaagacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcttactatacaggttgatactaaaagaaccctatttaatgcttcattttagaagacat 205
Query: 241 gggt 244
||||
Sbjct: 204 gggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_k12.g1 MSMg01no365_k12.g1 CHROMAT_FILE:
MSMg01no365_k12.g1 PHD_FILE: MSMg01no365_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:13 2005
(533 letters)
>mm_chr5_151261761_151262693
Length = 933
Score = 965 bits (499), Expect = 0.0
Identities = 526/537 (97%), Gaps = 4/537 (0%)
Strand = Plus / Plus
Query: 1 actaaatgcagcgaagatagttttgaagtgataacacaaaacatatcagtctggagtcct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 197 actaaatgcagcgaagatagttttgaagtgataacacaaaacacatcagtctggagtcct 256
Query: 61 gaaatgcctgtgagccagtgctgcgtgctctgctgaggtcagggctccttgaccgagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaaatgcctgtgagccagtgctgcgtgctctgctgaggtcagggctccttgaccgagcag 316
Query: 121 ctgacctaactctggtcttcggttagagttcaagggcagcaccctctgctttccagaagt 180
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 ctgacctaactctggtctttggttagagttcaaggtcagcaccctctgctttccagaagt 376
Query: 181 tcaactgacatcaaaggcggcatcctcctgtctcagccccaggatggtattacacagagt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcaactgacatcaaaggcagcatcctcctgtctcagccccaggatggtattacacagagt 436
Query: 241 gttctggaaggcaattagacataattccagaacggctagttcagaggcagaatacttatc 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggcctggaaggcaattagacataattccagaacggctagttcagaggcagaatacttatc 496
Query: 301 taacaagtctaacaggcttgactgcctgactatctcagccccaagaaaagcaaaacaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taacaagtctaacaggcttgactgcctgactatctcagccccaagaaaagcaaaacaaac 556
Query: 361 aaacaaacaaacaaacaaa----actgaagctatccagggacaataaatgataaatacca 416
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 557 aaacaaacaaacaaacaaacaaaactgaagctgtccagggacaataaatgataaatacca 616
Query: 417 gaatgtatctttcattatctctgtattgtcctaagcaacagcaactgacaactgaaaatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaatgtatctttcattatctctgtattgtcctaagcaacagcaactgacaactgaaaatc 676
Query: 477 acgtaggttactttatcacctaaggttaggatgttagagagctgaagaggaggctca 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acgtaggttactttatcacctaaggttaggatgttagagagctgaagaggaggctca 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
