XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GTCATGGCTTTACATAGAAGGTGCCAAAGGAACTCAACAAATCAAATACT
ACATTACATTAGACAGGAGCCAAGAGTCCAACCTATATAAAACAGATGTC
AAGGTTTTTGAGTCTGTACGTTAACCACCATAAACTCACAACACACGTTA
TTCTAAATACACACTCTCTCCTAAACCCAATCCATCACACTCTAAATATT
TCATTGTTTTATCAATGTGTGCTTGAAGAAATGTACTGGAGATGTCACTC
AGTGGTATAGTTGATCAATTATGTAACGTTTATGAGGCCCTAGATTCAAA
TTCCTGAACCATGAATAGGAAGAGGTTGGGAAGGCCTTTAACTTTAACTG
TATTTTTATGACTGTCCCAAGTTCTTTTGAGACAGGGTCATCACTAGGTA
GTACTGGTGGGCCTCAAGGAGCTGCCTGTTTCCCAGGGGACTGTAGGAGA
GGTGTGAGCCATCACACACACATTACTTGTTTCTGACATGAGAAATACTA
TGTTGCCCTAAGTCCCAATGCACCATAACTTAACCAATTAAGACTATAAC
AAAGATGGTACCCACTGCATTTATTTAAATTTTAAAAACTTATTGAGAAA
ACTGTTTTCAAGAATACCTGTTAACACCTATGCTAACATAGATTCTACTA
AATCTATAAAATAGATTCAGTCTTATTCATCTTATACCTCTCAAAAAGAA
GN

CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCTGAGATCACAGTTGCCTGCAACAC
ATGAAGTACATGTGCTGGGAATTGGAGCTCACACTTAGGAGGCAAACACC
AGTCACTTAGCTGTTTTCCCAGCTCCCTCCCTGATCAAATTAAGAATATT
GAAATAAACCAAGTGGTGGGTGGTTCACACCTTAAATCCCAGCACTAGAG
AGGCAGAGGCAGAGGCAGGTGGATCTCTAAGGATCTACACTGGCTAAGTT
CTAAAGCTACCCAGAGAAACCTTGTTTCAAAAAACCAAAATAAAAAATAA
AAAAATAAAAAATTAAAATAGCCATACATGGTGGTGTTCATGTTTAATTC
AAACACTTCAGAAGAGACTGGAGGATCTCTGTGAGTTTGAGGCCAGCCTG
GTCTACATAGGGTGTTCTCGGCCACCTAACAGTACACAGTGAGACCCTGT
CTCCAAAAATTAAAGAATATTGAGACCTTGAATTCTGAGGGTGAACATTT
TTTTTTTAAATGAAAAATATGGGGCCAGCAAGATTCATTAGGTAAATGTG
CTAAATCTGAAAACTTGAGTTGGATCTCTCATATGGTAGGAGAAACAATG
GCTTCCCACAAGTTGTCTCTAAGACCTCCACATGCAAGCCATGCATAGTC
TCTGTCACACACATATTCTTTAAGTAAAATGCAATGGAAAAATCTAAAAA
CAGATAGGA

Query= MSMg01no365_o16.b1 MSMg01no365_o16.b1 CHROMAT_FILE:
MSMg01no365_o16.b1 PHD_FILE: MSMg01no365_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:33 2005
         (653 letters)



>mm_chr5_66049580_66050632
          Length = 1053

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacatagaaggtgccaaaggaactcaacaaatcaaatactacattacattagacagga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tttacatagaaggtgccaaaggaactcaacaaattaaatactacattacattagacagga 260

                                                                       
Query: 61  gccaagagtccaacctatataaaacagatgtcaaggtttttgagtctgtacgttaaccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaagagtccaacctatataaaacagatgtcaaggtttttgagtctgtacgttaaccac 320

                                                                       
Query: 121 cataaactcacaacacacgttattctaaatacacactctctcctaaacccaatccatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cataaactcacaacacacgttattctaaatacacactctctcctaaacccaatccatcac 380

                                                                       
Query: 181 actctaaatatttcattgttttatcaatgtgtgcttgaagaaatgtactggagatgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctaaatatttcattgttttatcaatgtgtgcttgaagaaatgtactggagatgtcac 440

                                                                       
Query: 241 tcagtggtatagttgatcaattatgtaacgtttatgaggccctagattcaaattcctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtggtatagttgatcaattatgtaacgtttatgaggccctagattcaaattcctgaa 500

                                                                       
Query: 301 ccatgaataggaagaggttgggaaggcctttaactttaactgtatttttatgactgtccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgaataggaagaggttgggaaggcctttaactttaactgtatttttatgactgtccc 560

                                                                       
Query: 361 aagttcttttgagacagggtcatcactaggtagtactggtgggcctcaaggagctgcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagttcttttgagacagggtcatcactaggtagtactggtgggcctcaaggagctgcctg 620

                                                                       
Query: 421 tttcccaggggactgtaggagaggtgtgagccatcacacacacattacttgtttctgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcccaggggactgtaggagaggtgtgagccatcacacacacattacttgtttctgaca 680

                                                                       
Query: 481 tgagaaatactatgttgccctaagtcccaatgcaccataacttaaccaattaagactata 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagaaatactatgttaccctaagtcccaatgcaccataacttaaccaattaagactata 740

                                                                       
Query: 541 acaaagatggtacccactgcatttatttaaattttaaaaacttattgagaaaactgtttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaagatggtacccactgcatttatttaaattttaaaaacttattgagaaaactgtttt 800

                                                                
Query: 601 caagaatacctgttaacacctatgctaacatagattctactaaatctataaaa 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caagaatacctgttaacacctatgctaacatagattctactaaatctataaaa 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)